International
Tables for
Crystallography
Volume F
Crystallography of biological macromolecules
Edited by M. G. Rossmann and E. Arnold

International Tables for Crystallography (2006). Vol. F. ch. 16.1, p. 344   | 1 | 2 |

Section 16.1.9.1. Integration with isomorphous replacement

G. M. Sheldrick,c H. A. Hauptman,b C. M. Weeks,b* R. Millerb and I. Usóna

a Institut für Anorganisch Chemie, Universität Göttingen, Tammannstrasse 4, D-37077 Göttingen, Germany,bHauptman–Woodward Medical Research Institute, Inc., 73 High Street, Buffalo, NY 14203-1196, USA, and cLehrstuhl für Strukturchemie, Universität Göttingen, Tammannstrasse 4, D-37077 Göttingen, Germany
Correspondence e-mail:  weeks@orion.hwi.buffalo.edu

16.1.9.1. Integration with isomorphous replacement

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The integration of traditional direct methods with isomorphous replacement was initiated by Hauptman (1982a)[link], who studied the conditional probability distribution of triplet invariants comprised jointly of native and derivative phases assuming as known the six magnitudes associated with reciprocal-lattice vectors H, K and [-{\bf H}-{\bf K}]. It was shown that many triplets, whose true values were near either 0 or π, could be identified and reliably estimated. Later it was shown that cosine estimates could be obtained anywhere in the range −1 to +1 (Fortier et al., 1985[link]). In a series of six recent papers, Giacovazzo and collaborators utilized a combined direct-methods/isomorphous-replacement approach, with limited success, to devise procedures for the ab initio solution of the phase problem for macromolecules (Giacovazzo, Siliqi & Ralph, 1994[link]; Giacovazzo, Siliqi & Spagna, 1994[link]; Giacovazzo, Siliqi & Zanotti, 1995[link]; Giacovazzo & Platas, 1995[link]; Giacovazzo, Siliqi & Platas, 1995[link]; Giacovazzo et al., 1996[link]). Their methods depend only on diffraction data for a pair of isomorphous structures and do not require any prior structural knowledge. Hu & Liu (1997)[link] have generalized the earlier work to obtain the conditional distribution of the general (n-phase) structure invariant when diffraction data are available for any number (m) of isomorphous structures. Finally, it has been shown that, provided the heavy-atom substructure is known, Hauptman's triplet distribution leads to unique values for the triplets and the individual phases (Langs et al., 1995[link]).

References

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First citation Giacovazzo, C. & Platas, J. G. (1995). The ab initio crystal structure solution of proteins by direct methods. IV. The use of the partial structure. Acta Cryst. A51, 398–404.Google Scholar
First citation Giacovazzo, C., Siliqi, D. & Platas, J. G. (1995). The ab initio crystal structure solution of proteins by direct methods. V. A new normalizing procedure. Acta Cryst. A51, 811–820.Google Scholar
First citation Giacovazzo, C., Siliqi, D., Platas, J. G., Hecht, H.-J., Zanotti, G. & York, B. (1996). The ab initio crystal structure solution of proteins by direct methods. VI. Complete phasing up to derivative resolution. Acta Cryst. D52, 813–825.Google Scholar
First citation Giacovazzo, C., Siliqi, D. & Ralph, A. (1994). The ab initio crystal structure solution of proteins by direct methods. I. Feasibility. Acta Cryst. A50, 503–510.Google Scholar
First citation Giacovazzo, C., Siliqi, D. & Spagna, R. (1994). The ab initio crystal structure solution of proteins by direct methods. II. The procedure and its first applications. Acta Cryst. A50, 609–621.Google Scholar
First citation Giacovazzo, C., Siliqi, D. & Zanotti, G. (1995). The ab initio crystal structure solution of proteins by direct methods. III. The phase extension process. Acta Cryst. A51, 177–188.Google Scholar
First citation Hauptman, H. (1982a). On integrating the techniques of direct methods and isomorphous replacement. I. The theoretical basis. Acta Cryst. A38, 289–294.Google Scholar
First citation Hu, N.-H. & Liu, Y.-S. (1997). General expression for probabilistic estimation of multiphase structure invariants in the case of a native protein and multiple derivatives. Application to estimates of the three-phase structure invariants. Acta Cryst. A53, 161–167.Google Scholar
First citation Langs, D. A., Guo, D.-Y. & Hauptman, H. A. (1995). TDSIR phasing: direct use of phase-invariant distributions in macromolecular crystallography. Acta Cryst. A51, 535–542.Google Scholar








































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