International
Tables for
Crystallography
Volume F
Crystallography of biological macromolecules
Edited by M. G. Rossmann and E. Arnold

International Tables for Crystallography (2006). Vol. F. ch. 25.2, p. 710   | 1 | 2 |

Section 25.2.2.5.6. Averaging

K. D. Cowtan,b* K. Y. J. Zhangc and P. Maind

25.2.2.5.6. Averaging

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Averaging is performed using a single-step approach (Rossmann et al., 1992[link]), in which every copy of the molecule in a `virtual' asymmetric unit is averaged with every other copy. Density values are obtained at non-grid positions using a 27-point quadratic spectral spline interpolation. A sharpened map is first calculated by dividing by the Fourier transform of the quadratic spline function. The same spline function is then convoluted with the sharpened map to obtain the density value at an arbitrary coordinate (Cowtan & Main, 1998[link]). This approach gives very accurate interpolation from a coarse grid map with relatively little computation and additionally provides gradient information for the refinement of averaging operators.

References

First citation Cowtan, K. D. & Main, P. (1998). Miscellaneous algorithms for density modification. Acta Cryst. D54, 487–493.Google Scholar
First citation Rossmann, M. G., McKenna, R., Tong, L., Xia, D., Dai, J.-B., Wu, H., Choi, H.-K. & Lynch, R. E. (1992). Molecular replacement real-space averaging. J. Appl. Cryst. 25, 166–180.Google Scholar








































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