International Tables for Crystallography (2012). Vol. F, ch. 17.1, pp. 443-447
doi: 10.1107/97809553602060000853

Chapter 17.1. Macromolecular model building and validation using Coot

Contents

  • 17.1. Macromolecular model building and validation using Coot   (pp. 443-447) | html | pdf | chapter contents |
    • 17.1.1. Introduction  (p. 443) | html | pdf |
    • 17.1.2. Model building  (pp. 443-445) | html | pdf |
      • 17.1.2.1. Tools for general model building  (pp. 443-444) | html | pdf |
        • 17.1.2.1.1. Cα baton mode  (p. 443) | html | pdf |
        • 17.1.2.1.2. Find secondary structure  (pp. 443-444) | html | pdf |
        • 17.1.2.1.3. Place helix here and Place strand here  (p. 444) | html | pdf |
        • 17.1.2.1.4. Find ligands  (p. 444) | html | pdf |
      • 17.1.2.2. Rebuilding and refinement  (p. 444) | html | pdf |
      • 17.1.2.3. Tools for moving existing atoms  (pp. 444-445) | html | pdf |
        • 17.1.2.3.1. Real-space refine zone  (p. 444) | html | pdf |
        • 17.1.2.3.2. Sphere refinement  (p. 444) | html | pdf |
        • 17.1.2.3.3. Ramachandran restraints  (p. 444) | html | pdf |
        • 17.1.2.3.4. Rotamer tools  (pp. 444-445) | html | pdf |
        • 17.1.2.3.5. Torsion editing  (p. 445) | html | pdf |
      • 17.1.2.4. Tools for adding atoms to the model  (p. 445) | html | pdf |
        • 17.1.2.4.1. Find waters  (p. 445) | html | pdf |
        • 17.1.2.4.2. Add terminal residue  (p. 445) | html | pdf |
      • 17.1.2.5. Tools for handling noncrystallographic symmetry (NCS)  (p. 445) | html | pdf |
    • 17.1.3. Validation  (pp. 445-446) | html | pdf |
      • 17.1.3.1. Ramachandran plot  (p. 446) | html | pdf |
      • 17.1.3.2. Geometry analysis  (p. 446) | html | pdf |
      • 17.1.3.3. Peptide [\omega] analysis  (p. 446) | html | pdf |
      • 17.1.3.4. Rotamer analysis  (p. 446) | html | pdf |
      • 17.1.3.5. Density-fit analysis  (p. 446) | html | pdf |
    • 17.1.4. Scripting  (p. 446) | html | pdf |
    • 17.1.5. Discussion  (p. 446) | html | pdf |
    • References | html | pdf |
    • Figures
      • Fig. 17.1.1.1. The Coot main window  (p. 443) | html | pdf |
      • Fig. 17.1.3.1. A typical validation graph  (p. 445) | html | pdf |
      • Fig. 17.1.3.2. Interactive Ramachandran plot  (p. 446) | html | pdf |