International Tables for Crystallography (2012). Vol. F, ch. 19.8, pp. 620-623
doi: 10.1107/97809553602060000874

Chapter 19.8. Use of SPIDER and SPIRE in image reconstruction

Contents

  • 19.8. Use of SPIDER and SPIRE in image reconstruction  (pp. 620-623) | html | pdf | chapter contents |
    • 19.8.1. Introduction  (p. 620) | html | pdf |
    • 19.8.2. Basic philosophy of single-particle reconstruction  (pp. 620-621) | html | pdf |
    • 19.8.3. Implementation of single-particle reconstruction in SPIDER   (pp. 621-623) | html | pdf |
      • 19.8.3.1. Level 1: elementary commands  (pp. 621-622) | html | pdf |
      • 19.8.3.2. Level 2: procedures  (pp. 622-623) | html | pdf |
    • 19.8.4. Implementation of single-particle reconstruction in SPIRE   (p. 623) | html | pdf |
    • 19.8.5. Conclusion  (p. 623) | html | pdf |
    • References | html | pdf |
    • Figures
      • Fig. 19.8.2.1. Flow diagram of reference-based single-particle reconstruction by defocus groups  (p. 621) | html | pdf |
      • Fig. 19.8.3.1. Schematic representation of the SPIDER hierarchy of functional units and calling levels  (p. 622) | html | pdf |
      • Fig. 19.8.4.1. A SPIRE form, displaying the parameters, input files and output files of a SPIDER procedure file  (p. 622) | html | pdf |
      • Fig. 19.8.5.1. Reconstruction of the E. coli ribosome bound with the Phe-tRNA·EF-Tu·GDP ternary complex at 6.7 Å resolution, obtained by the protocol outlined here (LeBarron et al. , 2008)  (p. 622) | html | pdf |