International Tables for Crystallography (2012). Vol. F. ch. 22.5, pp. 736-748
https://doi.org/10.1107/97809553602060000889 |
Chapter 22.5. The relevance of the Cambridge Structural Database in protein crystallography
Contents
- 22.5. The relevance of the Cambridge Structural Database in protein crystallography (pp. 736-748) | html | pdf | chapter contents |
- 22.5.1. Introduction (p. 736) | html | pdf |
- 22.5.2. The CSD and the PDB: data acquisition and data quality (pp. 736-737) | html | pdf |
- 22.5.3. Structural knowledge from the CSD (pp. 737-738) | html | pdf |
- 22.5.4. Intramolecular geometry (pp. 738-740) | html | pdf |
- 22.5.4.1. Mean molecular dimensions (pp. 738-739) | html | pdf |
- 22.5.4.2. Conformational information (p. 739) | html | pdf |
- 22.5.4.3. Crystallographic conformations and energies (pp. 739-740) | html | pdf |
- 22.5.4.4. Conformational libraries (p. 740) | html | pdf |
- 22.5.4.5. Metal coordination geometry (p. 740) | html | pdf |
- 22.5.5. Intermolecular data (pp. 740-745) | html | pdf |
- 22.5.5.1. van der Waals radii (p. 740) | html | pdf |
- 22.5.5.2. Hydrogen-bond geometry and directionality (pp. 740-741) | html | pdf |
- 22.5.5.3. C—H···X hydrogen bonds (pp. 741-742) | html | pdf |
- 22.5.5.4. O—H···π and N—H···π hydrogen bonds (p. 742) | html | pdf |
- 22.5.5.5. Other non-covalent interactions (p. 742) | html | pdf |
- 22.5.5.6. Intermolecular motif formation in small-molecule crystal structures (pp. 742-743) | html | pdf |
- 22.5.5.7. The answer `no' (p. 743) | html | pdf |
- 22.5.5.8. IsoStar: a library of non-bonded interactions (p. 743) | html | pdf |
- 22.5.5.9. Protein–ligand binding (pp. 743-745) | html | pdf |
- 22.5.5.10. Modelling applications that use CSD data (p. 745) | html | pdf |
- 22.5.6. Conclusion (p. 745) | html | pdf |
- References | html | pdf |
- Figures
- Fig. 22.5.2.1. (a) Growth rate of the CSD and (b) growth rate of the PDB, in terms of the numbers of structures published per annum for the period 1970–1995 (p. 736) | html | pdf |
- Fig. 22.5.4.1. Distribution of torsion angles in C(sp3)—S—S—C(sp3) substructures located in the CSD (p. 739) | html | pdf |
- Fig. 22.5.5.1. The IsoStar knowledge-based library of intermolecular interactions: interaction of O—H donors (contact groups) with one of the >C=O acceptors of a carboxylate group (the central group) (p. 741) | html | pdf |
- Fig. 22.5.5.2. Distribution of O—H donors around ether oxygen acceptors (CSD data from the IsoStar library, see text) (p. 741) | html | pdf |
- Fig. 22.5.5.3. Distribution of oxygen atoms around C(aromatic)—I (CSD data from the IsoStar library, see text) (p. 743) | html | pdf |
- Fig. 22.5.5.4. Pairwise comparison of intermolecular-interaction density maps from the CSD and the PDB (p. 744) | html | pdf |
- Tables
- Table 22.5.3.1. Summary of amino-acid and peptide structures available in the CSD (April 1998, 181 309 entries) (p. 738) | html | pdf |
- Table 22.5.3.2. CSD entry statistics for selected metal-containing structures (p. 738) | html | pdf |
- Table 22.5.5.1. Residual densities for carboxylic acid groups (p. 745) | html | pdf |