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Four-dimensional cryo-electron microscopy at quasi-atomic resolution: IMAGIC 4D
van Heel, M., Portugal, R., Rohou, A., Linnemayr, C., Bebeacua, C., Schmidt, R., Grant, T. and Schatz, M., International Tables for Crystallography (2012). Vol. F, ch. 19.9, pp. 624-628 [ doi:10.1107/97809553602060000875 ]
statistics in analyzing the images of biological macromolecules. Ultramicroscopy, 6, 187–194. Google Scholar Heel, M. van, Gowen, B., Matadeen, R., Orlova, E. V., Finn, R., Pape, T., Cohen, D., Stark, H., Schmidt, R., Schatz, M ...

Software parallelization
van Heel, M., Portugal, R., Rohou, A., Linnemayr, C., Bebeacua, C., Schmidt, R., Grant, T. and Schatz, M., International Tables for Crystallography (2012). Vol. F, Section 19.9.4, pp. 625-625 [ doi:10.1107/97809553602060000875 ]
Interface . Scientific and Engineering Computation Series. Cambridge, MA: MIT Press. Google Scholar Heel, M. van, Gowen, B., Matadeen, R., Orlova, E. V., Finn, R., Pape, T., Cohen, D., Stark, H., Schmidt, R., Schatz, M. & Patwardhan, A. (2000 ...

The IMAGIC software system
van Heel, M., Portugal, R., Rohou, A., Linnemayr, C., Bebeacua, C., Schmidt, R., Grant, T. and Schatz, M., International Tables for Crystallography (2012). Vol. F, Section 19.9.2, pp. 624-624 [ doi:10.1107/97809553602060000875 ]
systems including Linux, Windows XP/Vista/7 and Mac OS-X. References Heel, M. van, Harauz, G., Orlova, E. V., Schmidt, R. & Schatz, M. (1996). A new generation of the IMAGIC image processing system. J. Struct. Biol. 116 ...

MSA and its parallelization
van Heel, M., Portugal, R., Rohou, A., Linnemayr, C., Bebeacua, C., Schmidt, R., Grant, T. and Schatz, M., International Tables for Crystallography (2012). Vol. F, Section 19.9.8, pp. 626-626 [ doi:10.1107/97809553602060000875 ]
B., Matadeen, R., Orlova, E. V., Finn, R., Pape, T., Cohen, D., Stark, H., Schmidt, R., Schatz, M. & Patwardhan, A. (2000). Single-particle electron cryo-microscopy: towards atomic resolution. Q. Rev. Biophys. 33, 307–369. Google Scholar ...

Angular reconstitution 4D refinements
van Heel, M., Portugal, R., Rohou, A., Linnemayr, C., Bebeacua, C., Schmidt, R., Grant, T. and Schatz, M., International Tables for Crystallography (2012). Vol. F, Section 19.9.10, pp. 627-627 [ doi:10.1107/97809553602060000875 ]
of projection directions for 3D reconstruction. Ultramicroscopy, 21, 111–124. Google Scholar Heel, M. van, Gowen, B., Matadeen, R., Orlova, E. V., Finn, R., Pape, T., Cohen, D., Stark, H., Schmidt, R., Schatz, M. & Patwardhan, A. (2000 ...

IMAGIC `4D' processing/data format
van Heel, M., Portugal, R., Rohou, A., Linnemayr, C., Bebeacua, C., Schmidt, R., Grant, T. and Schatz, M., International Tables for Crystallography (2012). Vol. F, Section 19.9.3, pp. 624-625 [ doi:10.1107/97809553602060000875 ]


Discussion
van Heel, M., Portugal, R., Rohou, A., Linnemayr, C., Bebeacua, C., Schmidt, R., Grant, T. and Schatz, M., International Tables for Crystallography (2012). Vol. F, Section 19.9.11, pp. 627-627 [ doi:10.1107/97809553602060000875 ]
& Keegstra, W. (1981). IMAGIC: a fast flexible and friendly image analysis software system. Ultramicroscopy, 7, 113–130. Google Scholar Heel, M. van & Schatz, M. (2005). Fourier shell correlation threshold criteria. J. Struct. Biol ...

Parallel automatic particle picking
van Heel, M., Portugal, R., Rohou, A., Linnemayr, C., Bebeacua, C., Schmidt, R., Grant, T. and Schatz, M., International Tables for Crystallography (2012). Vol. F, Section 19.9.6, pp. 625-625 [ doi:10.1107/97809553602060000875 ]


Introduction
van Heel, M., Portugal, R., Rohou, A., Linnemayr, C., Bebeacua, C., Schmidt, R., Grant, T. and Schatz, M., International Tables for Crystallography (2012). Vol. F, Section 19.9.1, pp. 624-624 [ doi:10.1107/97809553602060000875 ]
Microscopy of Macromolecular Assemblies . Oxford University Press. Google Scholar Heel, M. van, Gowen, B., Matadeen, R., Orlova, E. V., Finn, R., Pape, T., Cohen, D., Stark, H., Schmidt, R., Schatz, M. & Patwardhan, A. (2000). Single-particle ...

Parallel multi-reference alignments and reference bias
van Heel, M., Portugal, R., Rohou, A., Linnemayr, C., Bebeacua, C., Schmidt, R., Grant, T. and Schatz, M., International Tables for Crystallography (2012). Vol. F, Section 19.9.7, pp. 626-626 [ doi:10.1107/97809553602060000875 ]
Matadeen, R., Orlova, E. V., Finn, R., Pape, T., Cohen, D., Stark, H., Schmidt, R., Schatz, M. & Patwardhan, A. (2000). Single-particle electron cryo-microscopy: towards atomic resolution. Q. Rev. Biophys. 33, 307–369. Google Scholar ...

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