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Validation of protein crystal structures
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, ch. 21.1, pp. 649-661 [ doi:10.1107/97809553602060000879 ]
... experience, prejudices, expectations and local practices (Brändén & Jones, 1990; Kleywegt & Jones, 1995b, 1997). This means that errors in this ... derived from databases of well refined structures in model building (Kleywegt & Jones, 1998) [e.g. to generate main-chain coordinates from a ... deemed `unusual' and that require further scrutiny and perhaps adjustment; Kleywegt & Jones, 1996a, 1997); and (3) the use of global ...

BMRB
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.3.2.4, p. 831 [ doi:10.1107/97809553602060000896 ]
... are available online (Doreleijers et al., 2005). References Doreleijers, J. F., Nederveen, A. J., Vranken, W., Lin, J., Bonvin, A. M., Kaptein, R., Markley, J. L. & Ulrich, ...
     [more results from section 24.1.3 in volume F]

Data uniformity
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.2.5, p. 829 [ doi:10.1107/97809553602060000896 ]
... Henrick, K., Feng, Z., Bluhm, W. F., Dimitropoulos, D., Doreleijers, J. F., Dutta, S., Flippen-Anderson, J. L., Ionides, J., Kamada, C., Krissinel, E., Lawson, C. L., Markley, J. ...
     [more results from section 24.1.2 in volume F]

Introduction
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.1, p. 827 [ doi:10.1107/97809553602060000896 ]
... 10, 980. Berman, H. M., Henrick, K., Nakamura, H. & Markley, J. L. (2009). Structural Bioinformatics, 2nd ed., edited by J. Gu & P. E. Bourne, pp. 293-303. Hoboken: John Wiley & Sons, Inc. Bernstein, F. C., Koetzle, T. F., Williams, G. J., Meyer, E. F., Brice, M. D., Rodgers, J. ...

The Worldwide Protein Data Bank
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, ch. 24.1, pp. 827-832 [ doi:10.1107/97809553602060000896 ]
... the needs of expert and non-expert users alike (Velankar & Kleywegt, 2011). Besides offering basic and advanced search and retrieval ... and biological classification systems such EC, CATH and Pfam (Velankar & Kleywegt, 2011). Together with UniProt, PDBe also maintains the SIFTS ... 10, 980. Berman, H. M., Henrick, K., Nakamura, H. & Markley, J. L. (2009). Structural Bioinformatics, 2nd ed., edited by ...

Future
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, Section 21.1.8, p. 658 [ doi:10.1107/97809553602060000879 ]
... of nucleic acid models (Schultze & Feigon, 1997) and hetero-entities (Kleywegt & Jones, 1998) has only just begun. In addition, there is ... checkers? Four validation tools applied to eight atomic resolution structures. J. Mol. Biol. 276, 417-436. Kleywegt, G. J. & Jones, T. A. (1998). Databases in ...

Accountancy
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, Section 21.1.7.5, p. 658 [ doi:10.1107/97809553602060000879 ]
... D. A., Berman, H., Cantor, C., Doubet, S., Hubbard, T. J. P., Jones, T. A., Kleywegt, G. J., Kolaskar, A. S., van Kuik, A., Lesk, A. ...
     [more results from section 21.1.7 in volume F]

Final model
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, Section 21.1.6, p. 652 [ doi:10.1107/97809553602060000879 ]
... temperature factors, and a Luzzati-type estimate of coordinate error. Kleywegt & Jones (1995b) showed that these statistics are not necessarily even ... this makes the Ramachandran plot such a powerful validation tool (Kleywegt & Jones, 1996b, 1998). Other examples of useful independent tests ... structures, statistics and (last, but not least) biology and biochemistry (Kleywegt & Jones, 1995a). A good model will typically score ...

Preventing errors
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, Section 21.1.5, p. 652 [ doi:10.1107/97809553602060000879 ]
... Some general guidelines can be given (Dodson et al., 1996; Kleywegt & Jones, 1997). (1) Try to obtain the best possible ... averaging to remove model bias and to reduce phase errors (Kleywegt & Read, 1997). In the absence of noncrystallographic symmetry, use ... or new parts of the model; Jones et al., 1991; Kleywegt & Jones, 1998). All the crystallographer needs to do ...

Fixing errors
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, Section 21.1.4, pp. 651-652 [ doi:10.1107/97809553602060000879 ]
... not to approach the rebuilding process in a haphazard way (Kleywegt & Jones, 1997). O users can employ a program called OOPS (Kleywegt & Jones, 1996a) to carry out this task in a systematic ... and atoms (Jones et al., 1991; Jones & Kjeldgaard, 1994, 1997; Kleywegt & Jones, 1997), e.g. to flip a peptide plane, to ...

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