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The use of mmCIF architecture for PDB data management
Westbrook, J. D., Yang, H., Feng, Z. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, ch. 5.5, pp. 539-543 [ doi:10.1107/97809553602060000755 ]
... Institute of Neurological Disorders and Stroke (NINDS). References Berman, H. M., Henrick, K. & Nakamura, H. (2003). Announcing the worldwide Protein Data Bank. Nature Struct. Biol. 10, 980. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. ...

Building a structure-determination data pipeline
Westbrook, J. D., Yang, H., Feng, Z. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section 5.5.3.3, pp. 542-543 [ doi:10.1107/97809553602060000755 ]
Building a structure-determination data pipeline 5.5.3.3. Building a structure-determination data pipeline One goal of high-throughput structural genomics is the automatic capture of all the details of each step in the process of structure determination. Fig. 5.5.3.5 shows a simplified structure-determination data pipeline. The essential details of each ...
     [more results from section 5.5.3 in volume G]

Supporting other data formats and data delivery methods
Westbrook, J. D., Yang, H., Feng, Z. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section 5.5.2.3, p. 541 [ doi:10.1107/97809553602060000755 ]
Supporting other data formats and data delivery methods 5.5.2.3. Supporting other data formats and data delivery methods One of the greatest benefits of a dictionary-based informatics infrastructure is the flexibility that it provides in supporting alternative data formats and delivery methods. Because the data and all of their defining attributes ...
     [more results from section 5.5.2 in volume G]

Introduction
Westbrook, J. D., Yang, H., Feng, Z. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section 5.5.1, p. 539 [ doi:10.1107/97809553602060000755 ]
... data pipeline to support high-throughput structure determination. References Berman, H. M., Henrick, K. & Nakamura, H. (2003). Announcing the worldwide Protein Data Bank. Nature Struct. Biol. 10, 980. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. ...

Access
Westbrook, J. D., Yang, H., Feng, Z. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section 5.5.4, p. 543 [ doi:10.1107/97809553602060000755 ]
Access 5.5.4. Access All of the software tools and libraries described in this chapter are distributed with full source under an open-source licence. Applications are also distributed in binary form for Intel/Linux, Sun/Solaris, SGI/IRIX and Dec Alpha platforms. Several are also included on the CD-ROM accompanying ...

The Nucleic Acid Database
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, ch. 24.2, pp. 833-837 [ doi:10.1107/97809553602060000897 ]
... drawing of base pairing as calculated and drawn by RNAView (Yang et al., 2003), hydrogen-bonding classification, and torsion angles. Atlas ... structural features (http://www-lbit.iro.umontreal.ca/rnaml/ ). The program RNAViewer (Yang et al., 2003) uses Leontis-Westhof classification of base pairs ... site for local installation on the user's computer. RNAViewer (Yang et al., 2003) and S2S (originally RNAMLview; Jossinet & Westhof, ...

Structural coordinates and experimental data
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.4.1, p. 835 [ doi:10.1107/97809553602060000897 ]
Structural coordinates and experimental data 24.2.4.1. Structural coordinates and experimental data Structural coordinate files can be downloaded in mmCIF and PDB formats (Westbrook & Fitzgerald, 2009). Coordinates for the biological assembly of the molecule are provided for X-ray structures. When available, experimental files are made accessible to the community users. ...
     [more results from section 24.2.4 in volume F]

Atlas pages
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.3.4, p. 835 [ doi:10.1107/97809553602060000897 ]
... drawing of base pairing as calculated and drawn by RNAView (Yang et al., 2003), hydrogen-bonding classification, and torsion angles. Atlas ...
     [more results from section 24.2.3 in volume F]

Data processing and validation
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.2, pp. 833-834 [ doi:10.1107/97809553602060000897 ]
... and enzymes (polymerases, topoisomerases, endonucleases etc.). References Allen, F. H., Bellard, S., Brice, M. D., Cartwright, B. A., Doubleday, A., Higgs, H., Hummelink, T., Hummelink-Peters, B. G., Kennard, O., Motherwell, W. ... and display of information. Acta Cryst. B35, 2331-2339. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. ...

Introduction
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.1, p. 833 [ doi:10.1107/97809553602060000897 ]
... structures in yellow (scale on the right). References Berman, H., Henrick, K. & Nakamura, H. (2003). Announcing the worldwide Protein Data Bank. Nat. Struct. Biol. 10, 980. Berman, H. M., Olson, W. K., Beveridge, D. L., Westbrook, J., ...

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