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Use of SPIDER and SPIRE in image reconstruction
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, ch. 19.8, pp. 620-623 [ doi:10.1107/97809553602060000874 ]
... 1978, and has been continually improved and updated since then (Frank et al., 1981, 1996; Baxter et al., 2007; Shaikh et ... orientations. Using cryo-electron microscopy these methods, pioneered by Joachim Frank at the Wadsworth Center in Albany (see Frank, 2006), have recently allowed researchers to determine the 3D ...

Implementation of single-particle reconstruction in SPIRE
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, Section 19.8.4, p. 623 [ doi:10.1107/97809553602060000874 ]
... the Tk library). References Baxter, W. T., Leith, A. & Frank, J. (2007). SPIRE: the SPIDER reconstruction engine. J. Struct. Biol. 157, 56-63. International Tables for Crystallography ( ...

Level 2: procedures
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, Section 19.8.3.2, pp. 622-623 [ doi:10.1107/97809553602060000874 ]
Level 2: procedures 19.8.3.2. Level 2: procedures The modular design of SPIDER allows incremental development and flexibility by allowing the user to write scripts in the form of procedure files. Procedures containing sequences of commands can be executed just like single commands. Procedures have their own name space, can pass arguments ...
     [more results from section 19.8.3 in volume F]

Basic philosophy of single-particle reconstruction
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, Section 19.8.2, pp. 620-621 [ doi:10.1107/97809553602060000874 ]
... non-ratcheted' ribosomes as references. References Penczek, P. A., Zhu, J., Schroeder, R. & Frank, J. (1997). Three-dimensional reconstruction with contrast transfer function ...

Introduction
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, Section 19.8.1, p. 620 [ doi:10.1107/97809553602060000874 ]
... 1978, and has been continually improved and updated since then (Frank et al., 1981, 1996; Baxter et al., 2007; Shaikh et ... orientations. Using cryo-electron microscopy these methods, pioneered by Joachim Frank at the Wadsworth Center in Albany (see Frank, 2006), have recently allowed researchers to determine the 3D ...

Conclusion
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, Section 19.8.5, p. 623 [ doi:10.1107/97809553602060000874 ]
... protocol outlined here (LeBarron et al., 2008). References LeBarron, J., Grassucci, R. A., Shaikh, T. R., Baxter, W. T., Sengupta, J. & Frank, J. (2008). Exploration of parameters in cryo-EM ...

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