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Assessing the quality of macromolecular structures
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, ch. 21.2, pp. 662-676 [ doi:10.1107/97809553602060000880 ]
... Abagyan & Totrov, 1997). Here, we describe the approach of Pontius et al. (1996), in which deviations from standard atomic volumes ... of the dividing plane P between two atoms i and j, with van der Waals radii and , respectively, separated by a ... significant deviations from these ranges are flagged. The program PROVE (Pontius et al., 1996) implements such an approach using the ...

Atomic resolution structures
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, Section 21.2.4, p. 673 [ doi:10.1107/97809553602060000880 ]
... checkers? Four validation tools applied to eight atomic resolution structures. J. Mol. Biol. 276, 417-436. Deacon, A., Gleichmann, T., Kalb (Gilboa), A. J., Price, H., Raftery, J., Bradbrook, G., Yariv, J. & Helliwell, J. R. (1997). ...

Assessing the quality in specific regions of a model
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, Section 21.2.3.1.3.2, pp. 670-673 [ doi:10.1107/97809553602060000880 ]
Assessing the quality in specific regions of a model 21.2.3.1.3.2. Assessing the quality in specific regions of a model The main purpose for computing the four local quality measures, the B factor, the Density index, the atomic displacement (Shift) and the Density correlation (Table 21.2.3.3), is to identify problem regions in ...
     [more results from section 21.2.3 in volume F]

Deviations from standard atomic volumes as a quality measure for protein crystal structures
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, Section 21.2.2.2.3, pp. 664-665 [ doi:10.1107/97809553602060000880 ]
... Abagyan & Totrov, 1997). Here, we describe the approach of Pontius et al. (1996), in which deviations from standard atomic volumes ... of the dividing plane P between two atoms i and j, with van der Waals radii and , respectively, separated by a ... significant deviations from these ranges are flagged. The program PROVE (Pontius et al., 1996) implements such an approach using the ...
     [more results from section 21.2.2 in volume F]

Introduction
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, Section 21.2.1, p. 662 [ doi:10.1107/97809553602060000880 ]
... the data. References Laskowski, R. A., MacArthur, M. W. & Thornton, J. M. (1998). Validation of protein models derived from experiment. ... 8, 631-639. MacArthur, M. W., Laskowski, R. A. & Thornton, J. M. (1994). Knowledge-based validation of protein-structure coordinates ...

Concluding remarks
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, Section 21.2.5, p. 673 [ doi:10.1107/97809553602060000880 ]
... transform algorithm. Acta Cryst. A34, 791-809. Cruickshank, D. W. J. (1949). The accuracy of electron-density maps in X ... to dibenzyl. Acta Cryst. 2, 65-82. Cruickshank, D. W. J. (1996). Protein precision re-examined: Luzzati plots do not ... Das, U., Chen, S., Fuxreiter, M., Vaguine, A. A., Richelle, J., Berman, H. M. & Wodak, S. J. (2001). Checking ...

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