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 Results for DC.creator="J." AND DC.creator="Westbrook"   page 1 of 5 pages.
The Nucleic Acid Database
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, ch. 24.2, pp. 833-837 [ doi:10.1107/97809553602060000897 ]
... NDB created the first validation software package for nucleic acids (Westbrook et al., 2003), which is still used today. The NDB ... mmCIF; Bourne et al., 1997; Fitzgerald et al., 2005a,b; Westbrook et al., 2005) as its data standard. This format has ... of the data items, particularly the relationships between data items (Westbrook & Bourne, 2000). The latter feature is important because ...

Structural coordinates and experimental data
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.4.1, p. 835 [ doi:10.1107/97809553602060000897 ]
... coordinate files can be downloaded in mmCIF and PDB formats (Westbrook & Fitzgerald, 2009). Coordinates for the biological assembly of the ... experimental files are made accessible to the community users. References Westbrook, J. D. & Fitzgerald, P. M. D. (2009). Structural Bioinformatics, ...
     [more results from section 24.2.4 in volume F]

Atlas pages
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.3.4, p. 835 [ doi:10.1107/97809553602060000897 ]
Atlas pages 24.2.3.4. Atlas pages A powerful reporting option is the NDB Atlas (Fig. 24.2.3.1). An Atlas report summarizes the most important characteristics of a structure with information about the authors, citation, sequence(s) of nucleic acids and proteins reported. Atlas entries contain an outline of the experimental information, a ...
     [more results from section 24.2.3 in volume F]

Data processing and validation
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.2, pp. 833-834 [ doi:10.1107/97809553602060000897 ]
... mmCIF; Bourne et al., 1997; Fitzgerald et al., 2005a,b; Westbrook et al., 2005) as its data standard. This format has ... of the data items, particularly the relationships between data items (Westbrook & Bourne, 2000). The latter feature is important because it ... chiral centres of the sugars and phosphates for nucleic acids (Westbrook et al., 2003). The dictionaries used for checking ...

Introduction
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.1, p. 833 [ doi:10.1107/97809553602060000897 ]
... NDB created the first validation software package for nucleic acids (Westbrook et al., 2003), which is still used today. The NDB ... 980. Berman, H. M., Olson, W. K., Beveridge, D. L., Westbrook, J., Gelbin, A., Demeny, T., Hsieh, S. H., Srinivasan, A. ...

Formal specification of the Crystallographic Information File. Version 1.1 specification
Hall, S. R., Spadaccini, N., Brown, I. D., Bernstein, H. J., Westbrook, J. D. and McMahon, B.  International Tables for Crystallography (2006). Vol. G, Section 2.2.7, pp. 25-36 [ doi:10.1107/97809553602060000728 ]
... 9'|':'|'<'|'='|'>'|'?'|'@'|'A'|'B'|'C'|'D'|'E'|'F'|'G'|'H'| 'I'|'J'|'K'|'L'|'M'|'N'|'O'|'P'|'Q'|'R'|'S'|'T ... Z'| '\'|'^'|'`'|'a'|'b'|'c'|'d'|'e'|'f'|'g'|'h'|'i'|'j'|'k'|'l'|'m'|'n'|'o'| 'p'|'q'|'r'|'s'|'t ... These are known as DDL1 (Hall & Cook, 1995) and DDL2 (Westbrook & Hall, 1995), and they differ in the amount of ...
     [more results from section 2.2.7 in volume G]

Specification of the Crystallographic Information File (CIF)
Hall, S. R., Westbrook, J. D., Spadaccini, N., Brown, I. D., Bernstein, H. J. and McMahon, B.  International Tables for Crystallography (2006). Vol. G, ch. 2.2, pp. 20-36 [ doi:10.1107/97809553602060000728 ]
... Naur form. 2.2.1. Introduction S. R. Hall a* andJ. D. Westbrook b The term `Crystallographic Information File' (CIF) refers to data ... by COMCIFS. 2.2.2. Terminology | | S. R. Hall a* andJ. D. Westbrook b A summary of the basic terminology used throughout this ... syntax of a CIF | | S. R. Hall a* andJ. D. Westbrook b The essential syntax rules for a CIF data ...

Image dictionary (imgCIF)
Hammersley, A. P., Bernstein, H. J. and Westbrook, J. D.  International Tables for Crystallography (2006). Vol. G, ch. 4.6, pp. 444-458 [ doi:10.1107/97809553602060000746 ]
Image dictionary (imgCIF) This is version 1.3.2 of the image CIF dictionary (imgCIF) and crystallographic binary file (CBF) dictionary. Use of this dictionary is described in Chapter 3.7. The CBF format is described in Chapter 2.3 and Chapter 5.6 describes a software library for manipulating image data. The data names defined ...

Molecular structure
Fitzgerald, P. M. D., Westbrook, J. D., Bourne, P. E., McMahon, B., Watenpaugh, K. D. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section 3.6.7.5, pp. 178-189 [ doi:10.1107/97809553602060000738 ]
... nucleosides and nucleotides. New description using the concept of pseudorotation. J. Am. Chem. Soc. 94, 8205-8212. Engh, R. A. & Huber ... subjectivity. Nature (London), 343, 687-689. Jones, T. A., Zou, J.-Y., Cowan, S. W. & Kjeldgaard, M. (1991). Improved methods ...
     [more results from section 3.6.7 in volume G]

Groups of reflections
Fitzgerald, P. M. D., Westbrook, J. D., Bourne, P. E., McMahon, B., Watenpaugh, K. D. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section 3.6.6.3.2, pp. 163-164 [ doi:10.1107/97809553602060000738 ]
Groups of reflections 3.6.6.3.2. Groups of reflections The data items in these categories are as follows: (a) REFLNS (b) REFLNS_SCALE (c) REFLNS_SHELL (d) REFLNS_CLASS The bullet () indicates a category key. Where multiple items within a category are marked with a bullet, they must be taken together to form ...
     [more results from section 3.6.6 in volume G]

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