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Use of SPIDER and SPIRE in image reconstruction
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, ch. 19.8, pp. 620-623 [ doi:10.1107/97809553602060000874 ]
... improved and updated since then (Frank et al., 1981, 1996; Baxter et al., 2007; Shaikh et al., 2008; Yang et al. ... to be managed from a simple GUI (see Section 19.8.4; Baxter et al., 2007). (v) PubSub: a set of Perl ... engine) is an interactive GUI for managing a SPIDER reconstruction (Baxter et al., 2007). A project of single-particle ...

Implementation of single-particle reconstruction in SPIRE
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, Section 19.8.4, p. 623 [ doi:10.1107/97809553602060000874 ]
... engine) is an interactive GUI for managing a SPIDER reconstruction (Baxter et al., 2007). A project of single-particle reconstruction ... Tkinter module (the interface to the Tk library). References Baxter, W. T., Leith, A. & Frank, J. (2007). SPIRE: the ...

Level 2: procedures
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, Section 19.8.3.2, pp. 622-623 [ doi:10.1107/97809553602060000874 ]
Level 2: procedures 19.8.3.2. Level 2: procedures The modular design of SPIDER allows incremental development and flexibility by allowing the user to write scripts in the form of procedure files. Procedures containing sequences of commands can be executed just like single commands. Procedures have their own name space, can pass arguments ...
     [more results from section 19.8.3 in volume F]

Basic philosophy of single-particle reconstruction
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, Section 19.8.2, pp. 620-621 [ doi:10.1107/97809553602060000874 ]
... Scanning Microsc. 11, 147-154. Shaikh, T. R., Gao, H., Baxter, W. T., Asturias, F. J., Boisset, N., Leith, A. & Frank, J. ...

Introduction
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, Section 19.8.1, p. 620 [ doi:10.1107/97809553602060000874 ]
... improved and updated since then (Frank et al., 1981, 1996; Baxter et al., 2007; Shaikh et al., 2008; Yang et al. ... to be managed from a simple GUI (see Section 19.8.4; Baxter et al., 2007). (v) PubSub: a set of Perl ... is available under a Creative Commons Attribution 2.5 Licence. References Baxter, W. T., Leith, A. & Frank, J. (2007). SPIRE: ...

Conclusion
Leith, A., Baxter, W. and Frank, J.  International Tables for Crystallography (2012). Vol. F, Section 19.8.5, p. 623 [ doi:10.1107/97809553602060000874 ]
... . References LeBarron, J., Grassucci, R. A., Shaikh, T. R., Baxter, W. T., Sengupta, J. & Frank, J. (2008). Exploration of parameters ... Struct. Biol. 164, 24-32. Shaikh, T. R., Gao, H., Baxter, W. T., Asturias, F. J., Boisset, N., Leith, A. & ...

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