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The Worldwide Protein Data Bank
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, ch. 24.1, pp. 827-832 [ doi:10.1107/97809553602060000896 ]
... of refinement, [sigma] cutoff, geometry r.m.s.d., [sigma] Structure factors - h, k, l, Fobs, [sigma](Fobs), intensity, [sigma](intensity), flag for free ... items collected are in the PDB Exchange Dictionary (PDBx) (Westbrook, Henrick et al., 2005), which is based on the mmCIF syntax. ... collaborate to review all the data in the PDB archive (Henrick et al., 2008; Lawson et al., 2008). In ...

BMRB
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.3.2.4, p. 831 [ doi:10.1107/97809553602060000896 ]
... 12. Markley, J. L., Ulrich, E. L., Berman, H. M., Henrick, K., Nakamura, H. & Akutsu, H. (2008). BioMagResBank (BMRB) as a ...
     [more results from section 24.1.3 in volume F]

Data uniformity
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.2.5, p. 829 [ doi:10.1107/97809553602060000896 ]
... collaborate to review all the data in the PDB archive (Henrick et al., 2008; Lawson et al., 2008). In particular ... ongoing remediation efforts is available from http://wwpdb.org . References Henrick, K., Feng, Z., Bluhm, W. F., Dimitropoulos, D., Doreleijers, J. ...
     [more results from section 24.1.2 in volume F]

Introduction
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.1, p. 827 [ doi:10.1107/97809553602060000896 ]
... the services provided by the member sites. References Berman, H., Henrick, K. & Nakamura, H. (2003). Announcing the worldwide Protein Data Bank. Nat. Struct. Biol. 10, 980. Berman, H. M., Henrick, K., Nakamura, H. & Markley, J. L. (2009). Structural ...

Future
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.4, p. 831 [ doi:10.1107/97809553602060000896 ]
Future 24.1.4. Future Structural biology is a rapidly evolving field that constantly provides new challenges to the collection, curation and distribution of macromolecular structure data. Since 1998, the rate of depositions has tripled and the total holdings have increased by a factor of more than eight. The structures have increased in ...

Supporting software
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.4, p. 197 [ doi:10.1107/97809553602060000738 ]
Supporting software A3.6.2.4. Supporting software The RCSB/PDB has developed a set of software tools which support the PDB exchange dictionary framework (Chapter 5.5 ). These include PDB_EXTRACT, a tool to extract data from the output files of structure determination applications; ADIT, a web-based editor for data files based ...

Protein production
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.3.3, p. 197 [ doi:10.1107/97809553602060000738 ]
Protein production A3.6.2.3.3. Protein production The International Task Force on Deposition, Archiving, and Curation of Primary Information for Structural Genomics (Section A3.6.2.2) has also provided recommendations for the deposition of information about protein production. These recommendations are summarized at http://deposit.pdb.org/mmcif/sg-data/protprod.html . These data extensions have been ...

Cryo-electron microscopy
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.3.2, p. 197 [ doi:10.1107/97809553602060000738 ]
... include a description of the sample preparation, raw volume data (Henrick et al., 2003), structure solution and refinement. These extensions have ... of em_ (http://mmcif.pdb.org/dictionaries/mmcif_iims.dic/Index/ ). References Henrick, K., Newman, R., Tagari, M. & Chagoyen, M. (2003). EMDep: ...

Data exchange and format translation
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.1, pp. 195-196 [ doi:10.1107/97809553602060000738 ]
Data exchange and format translation A3.6.2.1. Data exchange and format translation The majority of crystallographic and structural concepts embodied in the PDB are already well described in the mmCIF data dictionary. However, while there is a conceptual description of most crystallographic information in PDB-format files within the mmCIF dictionary, the ...

Noncrystallographic methods
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.3, p. 197 [ doi:10.1107/97809553602060000738 ]
... include a description of the sample preparation, raw volume data (Henrick et al., 2003), structure solution and refinement. These extensions have ... and archiving. J. Chem. Inf. Comput. Sci. 31, 326-333. Henrick, K., Newman, R., Tagari, M. & Chagoyen, M. (2003). EMDep: ...

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