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Validation of protein crystal structures
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, ch. 21.1, pp. 649-661 [ doi:10.1107/97809553602060000879 ]
... experience, prejudices, expectations and local practices (Brändén & Jones, 1990; Kleywegt & Jones, 1995b, 1997). This means that errors in this ... derived from databases of well refined structures in model building (Kleywegt & Jones, 1998) [e.g. to generate main-chain coordinates from a ... deemed `unusual' and that require further scrutiny and perhaps adjustment; Kleywegt & Jones, 1996a, 1997); and (3) the use of global ...

BMRB
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.3.2.4, p. 831 [ doi:10.1107/97809553602060000896 ]
BMRB 24.1.3.2.4. BMRB The BMRB (http://www.bmrb.wisc.edu ) (Ulrich et al., 1989) collects and disseminates experimental NMR data and joined the wwPDB in 2006 (Markley et al., 2008). The BMRB archive can be searched by database ID, keywords, author, molecule name, sequence, sample conditions or other characteristics. The website contains statistics ...
     [more results from section 24.1.3 in volume F]

Data uniformity
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.2.5, p. 829 [ doi:10.1107/97809553602060000896 ]
Data uniformity 24.1.2.5. Data uniformity A key goal of the wwPDB is to make the archive as consistent and error-free as possible. Before files are released, all new depositions are reviewed by annotators. Errors found subsequent to release by authors and PDB users are addressed as rapidly as possible and ...
     [more results from section 24.1.2 in volume F]

Introduction
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.1, p. 827 [ doi:10.1107/97809553602060000896 ]
... Wiley & Sons, Inc. Bernstein, F. C., Koetzle, T. F., Williams, G. J., Meyer, E. F., Brice, M. D., Rodgers, J. R. ...

The Worldwide Protein Data Bank
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, ch. 24.1, pp. 827-832 [ doi:10.1107/97809553602060000896 ]
... the needs of expert and non-expert users alike (Velankar & Kleywegt, 2011). Besides offering basic and advanced search and retrieval ... and biological classification systems such EC, CATH and Pfam (Velankar & Kleywegt, 2011). Together with UniProt, PDBe also maintains the SIFTS ... Sons, Inc. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, ...

Future
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, Section 21.1.8, p. 658 [ doi:10.1107/97809553602060000879 ]
... of nucleic acid models (Schultze & Feigon, 1997) and hetero-entities (Kleywegt & Jones, 1998) has only just begun. In addition, there is ... eight atomic resolution structures. J. Mol. Biol. 276, 417-436. Kleywegt, G. J. & Jones, T. A. (1998). Databases in protein ...

Accountancy
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, Section 21.1.7.5, p. 658 [ doi:10.1107/97809553602060000879 ]
... C., Doubet, S., Hubbard, T. J. P., Jones, T. A., Kleywegt, G. J., Kolaskar, A. S., van Kuik, A., Lesk, A. M. ... Pfeiffer, F., Ten Eyck, L. F., Simpson, R. J., Stoesser, G., Sussman, J. L., Tateno, Y., Tsugita, A., Ulrich, E. ...
     [more results from section 21.1.7 in volume F]

Final model
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, Section 21.1.6, p. 652 [ doi:10.1107/97809553602060000879 ]
... temperature factors, and a Luzzati-type estimate of coordinate error. Kleywegt & Jones (1995b) showed that these statistics are not necessarily even ... this makes the Ramachandran plot such a powerful validation tool (Kleywegt & Jones, 1996b, 1998). Other examples of useful independent tests ... structures, statistics and (last, but not least) biology and biochemistry (Kleywegt & Jones, 1995a). A good model will typically score ...

Preventing errors
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, Section 21.1.5, p. 652 [ doi:10.1107/97809553602060000879 ]
... Some general guidelines can be given (Dodson et al., 1996; Kleywegt & Jones, 1997). (1) Try to obtain the best possible ... averaging to remove model bias and to reduce phase errors (Kleywegt & Read, 1997). In the absence of noncrystallographic symmetry, use ... or new parts of the model; Jones et al., 1991; Kleywegt & Jones, 1998). All the crystallographer needs to do ...

Fixing errors
Kleywegt, G. J.  International Tables for Crystallography (2012). Vol. F, Section 21.1.4, pp. 651-652 [ doi:10.1107/97809553602060000879 ]
... not to approach the rebuilding process in a haphazard way (Kleywegt & Jones, 1997). O users can employ a program called OOPS (Kleywegt & Jones, 1996a) to carry out this task in a systematic ... and atoms (Jones et al., 1991; Jones & Kjeldgaard, 1994, 1997; Kleywegt & Jones, 1997), e.g. to flip a peptide plane, to ...

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