modify your search
 Results for articles by Berman, H.M.   page 1 of 2 pages.
The Worldwide Protein Data Bank
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, ch. 24.1, pp. 827-832 [ doi:10.1107/97809553602060000896 ]
... the worldwide PDB (wwPDB; http://www.wwpdb.org/ ) was formed in 2003 (Berman et al., 2003, 2009) with an agreement between three deposition ... PDB archive. 24.1.3.2.1. RCSB PDB | | The RCSB PDB (http://www.pdb.org ) (Berman et al., 2000) provides a website with several functionalities. In ... Library of Medicine. This chapter is an updated version of Berman et al. (2009). Reprinted with permission of John ...

Structural coordinates and experimental data
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.4.1, p. 835 [ doi:10.1107/97809553602060000897 ]
Structural coordinates and experimental data 24.2.4.1. Structural coordinates and experimental data Structural coordinate files can be downloaded in mmCIF and PDB formats (Westbrook & Fitzgerald, 2009). Coordinates for the biological assembly of the molecule are provided for X-ray structures. When available, experimental files are made accessible to the community users. ...
     [more results from section 24.2.4 in volume F]

Atlas pages
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.3.4, p. 835 [ doi:10.1107/97809553602060000897 ]
Atlas pages 24.2.3.4. Atlas pages A powerful reporting option is the NDB Atlas (Fig. 24.2.3.1). An Atlas report summarizes the most important characteristics of a structure with information about the authors, citation, sequence(s) of nucleic acids and proteins reported. Atlas entries contain an outline of the experimental information, a ...
     [more results from section 24.2.3 in volume F]

Data processing and validation
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.2, pp. 833-834 [ doi:10.1107/97809553602060000897 ]
... are used by the Research Collaboratory for Structural Bioinformatics PDB (Berman et al., 2000) and the Protein Data Bank Japan (both ... analysis and display of information. Acta Cryst. B35, 2331-2339. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. ... Bank. Nucleic Acids Res. 28, 235-242. Bourne, P. E., Berman, H. M., McMahon, B., Watenpaugh, K. D., Westbrook, J. ...

Introduction
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, Section 24.2.1, p. 833 [ doi:10.1107/97809553602060000897 ]
Introduction 24.2.1. Introduction The Nucleic Acid Database (NDB) (Berman et al., 1992) was established in 1991 as a resource ... structures that were deposited into the Protein Data Bank (PDB) (Berman et al., 2003, Bernstein et al., 1977); it was the ... these structures in yellow (scale on the right). References Berman, H., Henrick, K. & Nakamura, H. (2003). Announcing the ...

The Nucleic Acid Database
Schneider, B., de la Cruz, J., Dutta, S., Feng, Z., Chen, L., Westbrook, J., Yang, H., Young, J., Zardecki, C. and Berman, H.M.  International Tables for Crystallography (2012). Vol. F, ch. 24.2, pp. 833-837 [ doi:10.1107/97809553602060000897 ]
... exploring RNA structure. 24.2.1. Introduction The Nucleic Acid Database (NDB) (Berman et al., 1992) was established in 1991 as a resource ... structures that were deposited into the Protein Data Bank (PDB) (Berman et al., 2003, Bernstein et al., 1977); it was the ... are used by the Research Collaboratory for Structural Bioinformatics PDB (Berman et al., 2000) and the Protein Data Bank Japan ( ...

Future
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.4, p. 831 [ doi:10.1107/97809553602060000896 ]
Future 24.1.4. Future Structural biology is a rapidly evolving field that constantly provides new challenges to the collection, curation and distribution of macromolecular structure data. Since 1998, the rate of depositions has tripled and the total holdings have increased by a factor of more than eight. The structures have increased in ...

BMRB
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.3.2.4, p. 831 [ doi:10.1107/97809553602060000896 ]
... NMR, 32, 1-12. Markley, J. L., Ulrich, E. L., Berman, H. M., Henrick, K., Nakamura, H. & Akutsu, H. (2008). ...
     [more results from section 24.1.3 in volume F]

Data uniformity
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.2.5, p. 829 [ doi:10.1107/97809553602060000896 ]
... Westbrook, J., Yamashita, R., Yang, H., Young, J., Yousufuddin, M. & Berman, H. M. (2008). Remediation of the Protein Data Bank ... Lawson, C. L., Dutta, S., Westbrook, J. D., Henrick, K. & Berman, H. M. (2008). Representation of viruses in the remediated ...
     [more results from section 24.1.2 in volume F]

Introduction
Berman, H.M., Henrick, K., Kleywegt, G., Nakamura, H. and Markley, J.  International Tables for Crystallography (2012). Vol. F, Section 24.1.1, p. 827 [ doi:10.1107/97809553602060000896 ]
... the worldwide PDB (wwPDB; http://www.wwpdb.org/ ) was formed in 2003 (Berman et al., 2003, 2009) with an agreement between three deposition ... description of the services provided by the member sites. References Berman, H., Henrick, K. & Nakamura, H. (2003). Announcing the worldwide Protein Data Bank. Nat. Struct. Biol. 10, 980. Berman, H. M., Henrick, K., Nakamura, H. & Markley, J. L. ( ...

Page: 1 2 Next powered by swish-e
























































to end of page
to top of page