Content of the data collected by the wwPDB
Berman, H.M.,
Henrick, K.,
Kleywegt, G.,
Nakamura, H. and
Markley, J.,
International Tables for Crystallography
(2012).
Vol. F,
Section 24.1.2.1,
p.
[ doi:10.1107/97809553602060000896 ]
of a nuclear magnetic resonance data repository and literature database . Protein Seq. Data Anal. 2, 23–37. Google Scholar
Westbrook, J.,
Henrick,
K., Ulrich, E. L. & Berman, H. M. (2005). International Tables for Crystallography, Vol. G ...
Data uniformity
Berman, H.M.,
Henrick, K.,
Kleywegt, G.,
Nakamura, H. and
Markley, J.,
International Tables for Crystallography
(2012).
Vol. F,
Section 24.1.2.5,
p.
[ doi:10.1107/97809553602060000896 ]
and antibiotics, and entries in nonstandard crystal frames. Documentation about ongoing remediation efforts is available from http://wwpdb.org
.
References
Henrick,
K., Feng, Z., Bluhm, W. F., Dimitropoulos, D., Doreleijers, J. F., Dutta ...
Validation and annotation
Berman, H.M.,
Henrick, K.,
Kleywegt, G.,
Nakamura, H. and
Markley, J.,
International Tables for Crystallography
(2012).
Vol. F,
Section 24.1.2.3,
p.
[ doi:10.1107/97809553602060000896 ]
...
Data deposition sites
Berman, H.M.,
Henrick, K.,
Kleywegt, G.,
Nakamura, H. and
Markley, J.,
International Tables for Crystallography
(2012).
Vol. F,
Section 24.1.2.2,
p.
[ doi:10.1107/97809553602060000896 ]
Newman, R., Naim, A., Vranken, W., Kapopoulou, A., Hussain, A., Fillon, J.,
Henrick,
K. & Velankar, S. (2006). E-MSD: improving data deposition and structure quality . Nucleic Acids Res. 34, D287–D290. Google Scholar ...
Data processing statistics
Berman, H.M.,
Henrick, K.,
Kleywegt, G.,
Nakamura, H. and
Markley, J.,
International Tables for Crystallography
(2012).
Vol. F,
Section 24.1.2.4,
p.
[ doi:10.1107/97809553602060000896 ]
The Worldwide Protein Data Bank
Fig.
24.1.2.1 shows the growth of PDB data since the archive began, indicating how the complexity of structures released into the archive has increased over time.
Figure
24.1.2.1 ...
Data acquisition and processing
Berman, H.M.,
Henrick, K.,
Kleywegt, G.,
Nakamura, H. and
Markley, J.,
International Tables for Crystallography
(2012).
Vol. F,
Section 24.1.2,
p.
[ doi:10.1107/97809553602060000896 ]
24.1.2.4. Data processing statistics
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Fig.
24.1.2.1 shows the growth of PDB data since the archive began, indicating how the complexity of structures released into the archive has increased over time ...
