CIFOBJ and related libraries
McMahon, B.,
International Tables for Crystallography
(2006).
Vol. G,
Section 5.3.8.1,
p.
[ doi:10.1107/97809553602060000753 ]
...
The OpenMMS toolkit
McMahon, B.,
International Tables for Crystallography
(2006).
Vol. G,
Section 5.3.8.2.1,
p.
[ doi:10.1107/97809553602060000753 ]
a Corba interface, an SQL schema for relational database loading and an XML representation of macromolecular data sets (Fig.
5.3.8.1).
Figure
5.3.8.1
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The OpenMMS metamodel and data flow ...
mmLib: a Python toolkit for bioinformatics applications
McMahon, B.,
International Tables for Crystallography
(2006).
Vol. G,
Section 5.3.8.3,
p.
[ doi:10.1107/97809553602060000753 ]
that historically have been used for representation of macromolecular structures (Westbrook & Fitzgerald, 2003) and for the MTZ format used by the CCP4 program suite (Collaborative Computational Project, Number 4, 1994).
Table
5.3.8.1 ...
Tools for mmCIF
McMahon, B.,
International Tables for Crystallography
(2006).
Vol. G,
Section 5.3.8,
p.
[ doi:10.1107/97809553602060000753 ]
dictionary (Appendix 3.6.2).
Figure
5.3.8.2
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Sample XML output from the OpenMMS XML generator. Lines have been omitted or wrapped to fit the present column width.
5.3.8.3 ...
OpenMMS
McMahon, B.,
International Tables for Crystallography
(2006).
Vol. G,
Section 5.3.8.2,
p.
[ doi:10.1107/97809553602060000753 ]
by the Research Collaboratory for Structural Bioinformatics to a Request for Proposal (Greer, 2000).
5.3.8.2.1. The OpenMMS toolkit
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In practice, the ontology was developed in a `metamodel' that combined the definitions ...
