PDB format
Westbrook, J. D.,
Yang, H.,
Feng, Z. and
Berman, H. M.,
International Tables for Crystallography
(2006).
Vol. G,
Section 5.5.2.1,
p.
[ doi:10.1107/97809553602060000755 ]
data format resembling many data formats developed to accommodate the limitations of paper punched-card technology (see Chapter 1.1). An example of the data format is shown in Fig.
5.5.2.1 .
Figure
5.5.2.1
| top ...
Representing macromolecular structure data
Westbrook, J. D.,
Yang, H.,
Feng, Z. and
Berman, H. M.,
International Tables for Crystallography
(2006).
Vol. G,
Section 5.5.2,
p.
[ doi:10.1107/97809553602060000755 ]
by Callaway et al. (1996). In addition to the labelled records as in Fig.
5.5.2.1, many data records in the PDB format are presented as unstructured or only semi-structured remark records.
5.5.2.2. Ontology representation ...
Supporting other data formats and data delivery methods
Westbrook, J. D.,
Yang, H.,
Feng, Z. and
Berman, H. M.,
International Tables for Crystallography
(2006).
Vol. G,
Section 5.5.2.3,
p.
[ doi:10.1107/97809553602060000755 ]
...
Ontology representation of macromolecular structure data
Westbrook, J. D.,
Yang, H.,
Feng, Z. and
Berman, H. M.,
International Tables for Crystallography
(2006).
Vol. G,
Section 5.5.2.2,
p.
[ doi:10.1107/97809553602060000755 ]
with high-throughput structure determinations.
The mmCIF metadata architecture is built from three levels as illustrated in Fig.
5.5.2.2 (see also Chapter 2.6). Individual data files are described at the top level (e.g. Fig.
5.5.2.2 ...
