International
Tables for Crystallography Volume A Space-group symmetry Edited by Th. Hahn © International Union of Crystallography 2006 |
International Tables for Crystallography (2006). Vol. A. ch. 15.3, pp. 900-903
https://doi.org/10.1107/97809553602060000535 Chapter 15.3. Examples of the use of normalizers
a
Institut für Mineralogie, Petrologie und Kristallographie, Philipps-Universität, D-35032 Marburg, Germany In Chapter 15.3, examples for the use of Euclidean and affine normalizers for crystallographic purposes are given: (i) The derivation of Euclidean- and affine-equivalent point configurations and Wyckoff positions constitutes the basis for the definition of Wyckoff sets. The derivation of all different but Euclidean-equivalent coordinate descriptions of a certain crystal structure is described provided that the description of its space group (basis vectors and origin) remains unchanged. (ii) Each transition from one coordinate description of a crystal structure to another equivalent one necessarily causes changes in the corresponding list of structure factors: either the phases of the reflections or the phases and the indices are changed. As a consequence, the Euclidean normalizers of the space groups lead to a simple derivation of phase restrictions for use in direct methods to `fix the origin and the enantiomorph'. (iii) Different subgroups (or supergroups) of a given space group that play an analogous role with respect to this space group may be identified with the aid of the Euclidean or affine normalizers. (iv) The ranges of the metrical and coordinate parameters that have to be considered for geometrical studies of point configurations can be reduced with the aid of the Euclidean and affine normalizers of space groups. Keywords: normalizers; point configurations; Wyckoff positions; equivalent crystal structures; structure factors; supergroups; subgroups; Euclidean normalizers; affine normalizers. |
The Euclidean and the affine normalizers of a space group form the appropriate tool to define equivalence relationships on sets of objects that are not symmetrically equivalent in this space group but `play the same role' with respect to this group. Two such objects referring to the same space group will be called Euclidean- or affine-equivalent if there exists a Euclidean or affine mapping that maps the two objects onto one another and, in addition, maps the space group onto itself.
15.3.2. Equivalent point configurations, equivalent Wyckoff positions and equivalent descriptions of crystal structures
In the crystal structure of copper, all atoms are symmetrically equivalent with respect to space group . The pattern of Cu atoms may be described equally well by Wyckoff position
or
. The Euclidean normalizer of
gives the relation between the two descriptions.
Two point configurations (crystallographic orbits)1 of a space group are called Euclidean- or
-equivalent (affine- or
-equivalent) if they are mapped onto each other by the Euclidean (affine) normalizer of
.
Affine-equivalent point configurations play the same role with respect to the space-group symmetry, i.e. their points are embedded in the pattern of symmetry elements in the same way. Euclidean-equivalent point configurations are congruent and may be interchanged when passing from one description of a crystal structure to another.
Starting from any given point configuration of a space group , one may derive all Euclidean-equivalent point configurations and –except for monoclinic and triclinic space groups – all affine-equivalent ones by successive application of the `additional generators' of the normalizer as given in Tables 15.2.1.3
and 15.2.1.4
.
Examples
The difference between the two examples is the following: The reference point 0.1, 0.1, 0.1 of the first example does not change its site symmetry .3m when passing from to
. Point 000 of the second example, however, has site symmetry
in
, but
in
.
The following rule holds without exception: The number of point configurations equivalent to a given one is equal to the quotient , with i being the subgroup index of
in its Euclidean or affine normalizer and
the subgroup index between the corresponding two site-symmetry groups of any point in the original point configuration.
As a necessary but not sufficient condition for when referring to the Euclidean normalizer, the inherent symmetry (eigensymmetry) of the point configuration considered (i.e. the group of all motions that maps the point configuration onto itself) must be a proper supergroup of
. If
designates the intersection group of
with the inherent symmetry of the point configuration, the number of Euclidean-equivalent point configurations equals the index of
in
.
Example
The Euclidean and affine normalizer of is
with index 8. Point configuration 4a xxx with
forms a face-centred cubic lattice with inherent symmetry
. The reference point 000 has site symmetry .3. in
but
in
. The number of equivalent point configurations, therefore, is
. One additional point configuration is generated by the translation
with
, the two others by applying the d-glide reflection
,
,
to the first two point configurations: 4a xxx with
and
. The intersection group
of the inherent symmetry
with the normalizer
is
. Its index 4 in
gives again the number of equivalent point configurations.
The set of equivalent point configurations is always infinite if the normalizer contains continuous translations but this set may be described by a finite number of subsets due to non-continuous translations.
Example
The Euclidean and affine normalizer of is
(a, b, ɛc). With the aid of the `additional generators' given in Table 15.2.1.4
, one can calculate two subsets of point configurations that are equivalent to a given general point configuration 6a xyz with
,
,
: 6a xyz with
and
. If, however, the coordinates for the original point configuration are specialized, e.g. to
,
or to
,
, only one subset exists, namely
or 0, 0,
, respectively. The reduction of the number of subsets is a consequence of the enhancement of the site symmetry in the normalizer (.2. or 622, respectively), but the index
, as introduced above, does not necessarily give the reduction factor for the number of subsets.
It has to be noticed that for most space groups with a Euclidean normalizer containing continuous translations the index is larger than 1 for all point configurations, i.e. the number of subsets of equivalent point configurations is necessarily reduced. The general Wyckoff position of such a space group does not belong to a characteristic type of Wyckoff sets (cf. Part 14
) and the inherent symmetry of all corresponding point configurations is enhanced.
Example
The Euclidean and affine normalizer of P6 is (a, b, ɛc). As a consequence of the continuous translations, the site symmetry of any point is at least m.. in
. With the aid of the `additional generators', one calculates four subsets of point configurations that are equivalent to a given general point configuration 6d xyz with
,
,
:
;
;
;
. The first two and the second two subsets coincide, however.
According to the above examples, Euclidean- (affine-) equivalent point configurations may or may not belong to the same Wyckoff position. Consequently, normalizers also define equivalence relations on Wyckoff positions:
Two Wyckoff positions of a space group are called Euclidean- or
-equivalent (affine- or
-equivalent) if their point configurations are mapped onto each other by the Euclidean (affine) normalizer of
.
Euclidean-equivalent Wyckoff positions are important for the description or comparison of crystal structures in terms of atomic coordinates. Affine-equivalent Wyckoff positions result in Wyckoff sets (cf. Section 8.3.2
and Chapter 14.1
) and form the necessary basis for the definition of lattice complexes. All site-symmetry groups corresponding to equivalent Wyckoff positions are conjugate in the respective normalizer.
Examples
The Euclidean and affine normalizer of is
. It maps the point configurations
and
(body-centred tetragonal lattices) onto each other. Accordingly, Wyckoff positions a to d are affine-equivalent and together form a Wyckoff set. Analogous point configurations exist in subgroup
of
(again Wyckoff positions a to d). The Euclidean and affine normalizer of
, however, is
,
, not containing
. Therefore, Wyckoff positions a and b form one Wyckoff set, c and d a different one. This is also reflected in the site-symmetry groups
.. and 2.22.
The existence of Euclidean-equivalent point configurations results in different but equivalent descriptions of crystal structures (exception: crystal structures with symmetry or
). All such equivalent descriptions are derived by applying the additional generators of the Euclidean normalizer of the space group
to all point configurations of the original description. Since an adequate description of a crystal structure always displays the full symmetry group of that structure, the number of equivalent descriptions must equal the index of
in
.
Example
Ag3PO4 crystallizes with symmetry (cf. Masse et al., 1976
): P at 2a 000, Ag at
and O at 8e xxx with
.
with index 4 gives rise to three additional equivalent descriptions:
yields P at 2a 000, Ag at
and O at 8e xxx with
; inversion through the origin results in P at 2a 000, Ag at
, O at 8e xxx with
and in P at 2a 000, Ag at
and O at 8e xxx with
. Although the phosphorus configuration is the same for all descriptions and the silver and oxygen atoms refer to only two configurations each, their combinations result in a total of four different equivalent descriptions of the structure.
If the Euclidean normalizer of a space group contains continuous translations, each crystal structure with that symmetry refers to an infinite set of equivalent descriptions. This set may be subdivided into a finite number of subsets in such a way that the descriptions of each subset vary according to the continuous translations. The number of these subsets is given by the product of the finite factors listed in the last column of Tables 15.2.1.3
and 15.2.1.4
.
Example
The tetragonal form of BaTiO3 has been described in space group P4mm (cf. e.g. Buttner & Maslen, 1992): Ba at 1a 00z with
, Ti at
with
, O1 at
with
, and O2 at
with
.
gives rise to
equivalent descriptions of this structure. The continuous translation with vector (00t) yields a first infinite subset of equivalent descriptions: Ba at 1a 00z with
, Ti at
with
, O1 at
with
, and O2 at
with
. The translation with vector
generates a second infinite subset: Ba at
with
, Ti at 1a 00z with
, O1 at 1a 00z with
, and O2 at
with
. Inversion through the origin causes two further infinite subsets of equivalent coordinate descriptions of BaTiO3: first, Ba at 1a 00z with
, Ti at
with
, O1 at
with
, and O2 at
with
; second, Ba at
with
, Ti at 1a 00z with
, O1 at 1a 00z with
, and O2 at
with
.
More details on Euclidean-equivalent point configurations and descriptions of crystal structures have been given by Fischer & Koch (1983).
All the different but equivalent descriptions of a crystal structure refer to different but equivalent lists of structure factors. These lists contain the same moduli of the structure factors , but they differ in their indices
and phases
.
In the previous section, the unit cell (basis and origin) of a space group has been considered fixed, whereas the crystal structure or its enantiomorph was embedded into the pattern of symmetry elements at different but equivalent locations. In the present context, however, it is advantageous to regard the crystal structure as being fixed and to let
transform the basis and the origin with respect to which the crystal structure is described. This matches the usual approach to resolve the ambiguities in direct methods by fixing the origin and the absolute structure.
Each matrix–vector pair (P, p) representing an element of describes a unit-cell transformation of
. According to Section 5.1.3
the following equations hold:
As a consequence, the phase
of a certain structure factor also changes into
.
Similar to equivalent descriptions of a crystal structure, it is possible to derive all equivalent lists of structure factors: The additional generators of are pure translations that leave the indices h of all structure factors unchanged but transform their phases according to
. Therefore, the origin for the description of the crystal structure may be fixed by appropriate restrictions of some phases. The number of these phases equals the number of additional generators of
, given in Table 15.2.1.3
or 15.2.1.4
. These generators [together with the inversion that generates
, if present] also determine the parity classes of the structure factors and the ranges for the phase restrictions.
The inversion that generates changes the handedness of the coordinate system in direct space and in reciprocal space and, therefore, gives rise to different absolute crystal structures. The indices of a given structure factor change from h to
, whereas the phase is influenced only if the symmetry centre is not located at 000.
If no anomalous scattering is observed, Friedel's rule holds and the moduli of any two structure factors with indices h and −h are equal. As a consequence, different absolute crystal structures result in lists of structure factors and indices that differ only in their phases. Therefore, one phase may be restricted to an appropriate range of length π to fix the absolute structure. This is not possible if anomalous scattering has been observed.
If differs from
, i.e. if
and
belong to different Laue classes, the further generators of
always change the orientation of the basis in direct and in reciprocal space. Therefore, the indices of the structure factors are permuted, but their phases are transformed only if
. The choice between these equivalent descriptions of the crystal structure is made when indexing the reflection pattern. In the case of anomalous scattering, the similar choice between the absolute structures is also combined with the indexing procedure.
Example
According to Table 15.2.1.3
, eight equivalent descriptions exist for each crystal structure with symmetry F222. Four of them differ only by an origin shift and the other four are enantiomorphic to the first four.
transforms all phases according to
, which gives rise to four parity classes of structure factors:
,
,
and
(n integer). As
generates all additional translations of
, restriction of one phase
to a range of length
fixes the origin. Restriction of a second phase
to an appropriately chosen range of length π discriminates between pairs of enantiomorphic descriptions in the absence of anomalous scattering. For
, the corresponding change of phases is
. Table 15.3.3.1
shows, for structure factors from all parity classes, how their phases depend on the chosen description of the crystal structure. Only phases from parity classes
or
determine the origin in a unique way. The phase
that fixes the absolute structure may be chosen from any parity class but the appropriate range for its restriction depends on the parity classes of
and
and, moreover, on the range chosen for
. If, for instance,
with
is restricted to
, one of the following restrictions may be chosen for
for
;
for
for
;
for
. If, however, the phase
of the same first reflection was restricted to
, the possible restrictions for the second phase change to:
for
or
for
or
(for further details, cf. Koch, 1986
).
|
The Euclidean or affine normalizer of a space group maps any subgroup or supergroup of
either onto itself or onto another subgroup or supergroup of
. Accordingly, these normalizers define equivalence relationships on the sets of subgroups and supergroups of
(Koch, 1984b
):
Two subgroups or supergroups of a space group are called Euclidean- or
- equivalent (affine- or
- equivalent) if they are mapped onto each other by an element of the Euclidean (affine) normalizer of
, i.e. if they are conjugate subgroups of the Euclidean (affine) normalizer.
In the following, the term `equivalent subgroups (supergroups)' is used if a statement is true for Euclidean-equivalent and affine-equivalent subgroups (supergroups), and is used to designate the Euclidean as well as the affine normalizer.
The knowledge of Euclidean-equivalent subgroups is necessary in connection with the possible deformations of a crystal structure due to subgroup degradation. Affine-equivalent subgroups play an important role for the derivation and classification of black-and-white groups (magnetic groups) and of colour groups (cf. for example Schwarzenberger, 1984). Information on equivalent supergroups is useful for the determination of the idealized type of a crystal structure.
For any pair of space groups and
with
, the relation between the two normalizers
and
controls the subgroups of
that are equivalent to
and the supergroups of
equivalent to
. The intersection group of both normalizers,
may or may not coincide with
and/or with
. The following two statements hold generally:
Equivalent subgroups are conjugate in if and only if
. In this case,
contains elements not belonging to
and the cosets of
in
refer to the different conjugate subgroups.
Examples
15.3.5. Reduction of the parameter regions to be considered for geometrical studies of point configurations
Each point configuration with space-group symmetry may be described by its metrical and coordinate parameters. To cover all point configurations belonging to a certain space-group type exactly once, the metrical parameters of
have to be varied without restrictions, whereas the coordinate parameters x, y and z must be restricted to one asymmetric unit of
. For the study of the geometrical properties of point configurations (e.g. sphere-packing conditions or types of Dirichlet domains, etc.), the Euclidean normalizers (cf. e.g. Laves, 1931
; Fischer, 1971
, 1991
; Koch, 1984a
) as well as the affine normalizers (cf. Fischer, 1968
) of the space groups allow a further reduction of the parameter regions that have to be considered.
Examples
References
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