mmLib.Library.Monomer

Package mmLib :: Module Library :: Class Monomer

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Class Monomer

      object --+    
               |    
MonomerInterface --+
                   |
                  Monomer

Monomer definition from RCSB component dictionary.

Method Summary
	`__init__(self, **args)`
	`get_polymer_bond_list(self, mon1, mon2)` Returns a list of 2-tuples.
	`is_amino_acid(self)` Returns True if the Monomer is a amino acid, otherwise returns False.
	`is_nucleic_acid(self)` Returns True if the Monomer is a nucleic acid, otherwise returns False.
	`is_water(self)` Returns True if the Monomer is a water molecule, otherwise returns False.
Inherited from MonomerInterface
	`is_standard_residue(self)`
Inherited from object
	`__delattr__(...)` x.__delattr__('name') <==> del x.name
	`__getattribute__(...)` x.__getattribute__('name') <==> x.name
	`__hash__(x)` x.__hash__() <==> hash(x)
	`__reduce__(...)` helper for pickle
	`__reduce_ex__(...)` helper for pickle
	`__repr__(x)` x.__repr__() <==> repr(x)
	`__setattr__(...)` x.__setattr__('name', value) <==> x.name = value
	`__str__(x)` x.__str__() <==> str(x)
Inherited from type
	`__new__(T, S, ...)` T.__new__(S, ...) -> a new object with type S, a subtype of T

Method Details

get_polymer_bond_list(self, mon1, mon2)

Returns a list of 2-tuples. Each 2-tuple (mon1_name, mon2_name) represents one bond between the atom named mon1_name in mon1 and the atom named mon2_name in mon2.

Overrides:: mmLib.Library.MonomerInterface.get_polymer_bond_list

is_amino_acid(self)

Returns True if the Monomer is a amino acid, otherwise returns False.

Overrides:: mmLib.Library.MonomerInterface.is_amino_acid

is_nucleic_acid(self)

Returns True if the Monomer is a nucleic acid, otherwise returns False.

Overrides:: mmLib.Library.MonomerInterface.is_nucleic_acid

is_water(self)

Returns True if the Monomer is a water molecule, otherwise returns False.

Overrides:: mmLib.Library.MonomerInterface.is_water

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