mmLib.PDB.PDBFile

Package mmLib :: Module PDB :: Class PDBFile

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Class PDBFile

object --+    
         |    
      list --+
             |
            PDBFile

Class for managing a PDB file. This class inherits from a Python list object, and contains a list of PDBRecord objects. Load, save, edit, and create PDB files with this class.

Method Summary
	`__setattr__(self, i, rec)`
	`append(self, rec)`
	`insert(self, i, rec)`
	`load_file(self, fil, update_cb)` Loads a PDB file from File object fil.
	`record_processor(self, processor, filter_func)` Iterates the PDB records in self, and searches for handling methods in the processor object for reading the objects.
	`save_file(self, fil)` Saves the PDBFile object in PDB file format to File object fil.
Inherited from list
	`__init__(...)` x.__init__(...) initializes x; see x.__class__.__doc__ for signature
	`__add__(x, y)` x.__add__(y) <==> x+y
	`__contains__(x, y)` x.__contains__(y) <==> y in x
	`__delitem__(x, y)` x.__delitem__(y) <==> del x[y]
	`__delslice__(x, i, j)` Use of negative indices is not supported.
	`__eq__(x, y)` x.__eq__(y) <==> x==y
	`__ge__(x, y)` x.__ge__(y) <==> x>=y
	`__getattribute__(...)` x.__getattribute__('name') <==> x.name
	`__getitem__(x, y)` x.__getitem__(y) <==> x[y]
	`__getslice__(x, i, j)` Use of negative indices is not supported.
	`__gt__(x, y)` x.__gt__(y) <==> x>y
	`__hash__(x)` x.__hash__() <==> hash(x)
	`__iadd__(x, y)` x.__iadd__(y) <==> x+=y
	`__imul__(x, y)` x.__imul__(y) <==> x*=y
	`__iter__(x)` x.__iter__() <==> iter(x)
	`__le__(x, y)` x.__le__(y) <==> x<=y
	`__len__(x)` x.__len__() <==> len(x)
	`__lt__(x, y)` x.__lt__(y) <==> x<y
	`__mul__(x, n)` x.__mul__(n) <==> x*n
	`__ne__(x, y)` x.__ne__(y) <==> x!=y
	`__repr__(x)` x.__repr__() <==> repr(x)
	`__rmul__(x, n)` x.__rmul__(n) <==> n*x
	`__setitem__(x, i, y)` x.__setitem__(i, y) <==> x[i]=y
	`__setslice__(x, i, j, y)` Use of negative indices is not supported.
	`count(L, value)` L.count(value) -> integer -- return number of occurrences of value
	`extend(...)` L.extend(iterable) -- extend list by appending elements from the iterable
	`index(...)` L.index(value, [start, [stop]]) -> integer -- return first index of value
	`pop(L, index)` L.pop([index]) -> item -- remove and return item at index (default last)
	`remove(...)` L.remove(value) -- remove first occurrence of value
	`reverse(...)` L.reverse() -- reverse IN PLACE
	`sort(...)` L.sort(cmpfunc=None) -- stable sort IN PLACE; cmpfunc(x, y) -> -1, 0, 1
Inherited from object
	`__delattr__(...)` x.__delattr__('name') <==> del x.name
	`__reduce__(...)` helper for pickle
	`__reduce_ex__(...)` helper for pickle
	`__str__(x)` x.__str__() <==> str(x)
Inherited from type
	`__new__(T, S, ...)` T.__new__(S, ...) -> a new object with type S, a subtype of T

Method Details

load_file(self, fil, update_cb=None)

Loads a PDB file from File object fil.

record_processor(self, processor, filter_func=None)

Iterates the PDB records in self, and searches for handling methods in the processor object for reading the objects. There are several choices for methods names for the processor objects.

save_file(self, fil)

Saves the PDBFile object in PDB file format to File object fil.

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