org.rcsb.openmms.entry
Class EntryImpl

java.lang.Object
  |
  +--org.omg.PortableServer.Servant
        |
        +--org.omg.DsLSRMacromolecularStructure.EntryPOA
              |
              +--org.rcsb.openmms.loader.EntryMethodImpl
                    |
                    +--org.rcsb.openmms.entry.EntryImpl

All Implemented Interfaces:

EntryOperations, org.omg.CORBA.portable.InvokeHandler

public class EntryImpl

extends EntryMethodImpl

This Class, EntryImpl extends EntryMethodImpl which extends _EntryImplBase EntryMethodImpl is generated by MMSExpr and defines all of the "getList" methods for the Core module. _EntryImplBase is generated by the IDL to Java compiler for the "Entry" Corba interface.

Version:

1.10

Author:

Douglas S. Greer

Field Summary

Fields inherited from class org.rcsb.openmms.loader.EntryMethodImpl

_atom_site_anisotrop_list, _atom_site_ext_list, _atom_site_list, _atom_type_list, _chem_comp_angle_list, _chem_comp_atom_list, _chem_comp_bond_list, _chem_comp_chir_atom_list, _chem_comp_chir_list, _chem_comp_link_list, _chem_comp_list, _chem_comp_plane_atom_list, _chem_comp_plane_list, _chem_comp_tor_list, _chem_comp_tor_value_list, _chem_link_angle_list, _chem_link_bond_list, _chem_link_chir_atom_list, _chem_link_chir_list, _chem_link_list, _chem_link_plane_atom_list, _chem_link_plane_list, _chem_link_tor_list, _chem_link_tor_value_list, _entity_keywords_list, _entity_link_list, _entity_list, _entity_name_com_list, _entity_name_sys_list, _entity_poly_list, _entity_poly_seq_list, _entity_src_gen_list, _entity_src_nat_list, _entry_link_list, _geom_angle_list, _geom_bond_list, _geom_contact_list, _geom_hbond_list, _geom_list, _geom_torsion_list, _pdbx_entity_assembly_list, _pdbx_entity_name_list, _pdbx_entity_src_syn_list, _pdbx_nonpoly_scheme_list, _pdbx_poly_seq_scheme_list, _pdbx_prerelease_seq_list, _pdbx_struct_sheet_hbond_list, _presence_flags, _struct_asym_list, _struct_biol_gen_list, _struct_biol_keywords_list, _struct_biol_list, _struct_biol_view_list, _struct_conf_list, _struct_conf_type_list, _struct_conn_list, _struct_conn_type_list, _struct_keywords_list, _struct_mon_details_list, _struct_mon_nucl_list, _struct_mon_prot_cis_list, _struct_mon_prot_list, _struct_ncs_dom_lim_list, _struct_ncs_dom_list, _struct_ncs_ens_gen_list, _struct_ncs_ens_list, _struct_ncs_oper_list, _struct_ref_list, _struct_ref_seq_dif_list, _struct_ref_seq_list, _struct_sheet_hbond_list, _struct_sheet_list, _struct_sheet_order_list, _struct_sheet_range_list, _struct_sheet_topology_list, _struct_site_gen_list, _struct_site_keywords_list, _struct_site_list, _struct_site_view_list, _structure_list, nmr, ref, xray

Constructor Summary

EntryImpl(java.lang.String id, EntryFoundry e)

EntryImpl(java.lang.String id, EntryFoundry e, int k)

EntryImpl(java.lang.String id, EntryFoundry e, java.lang.String path)

Method Summary

boolean	cacheValue(java.lang.Object[] var, int sFlag)
byte[]	get_presence_flags()
org.omg.CosPropertyService.Property[]	get_subentry_list()
java.util.Date	getDepositionDate()
java.lang.String	getEntryId()
EntryFoundry	getFoundry()
int	getKey()
java.lang.Object[]	getList(int sFlag)
java.lang.Object[]	getListBlock(int sFlag, int from, int to)
int	getListSize(int sFlag)
java.lang.String	getPath()
byte[]	getPresenceFlags(int mod)
boolean	initEntry() Overide initEntry dummy method in MMSExpr generated EntryMethodImpl superclass Returns true if all variable values have been read when the file was inited.
void	setCompositeAtomIndexList(java.util.ArrayList aia)
void	setCompositeSeqIndexList(java.util.ArrayList sia)
void	setDebug(int d)
void	setDepositionDate(java.util.Date dt)
void	setPresenceFlags(int mod, byte[] also) The existing presence flags are set to the OR of the specified flags and the old value.

Methods inherited from class org.rcsb.openmms.loader.EntryMethodImpl

atom_site_anisotrop_list_size, atom_site_ext_list_size, atom_site_list_size, atom_type_list_size, chem_comp_angle_list_size, chem_comp_atom_list_size, chem_comp_bond_list_size, chem_comp_chir_atom_list_size, chem_comp_chir_list_size, chem_comp_link_list_size, chem_comp_list_size, chem_comp_plane_atom_list_size, chem_comp_plane_list_size, chem_comp_tor_list_size, chem_comp_tor_value_list_size, chem_link_angle_list_size, chem_link_bond_list_size, chem_link_chir_atom_list_size, chem_link_chir_list_size, chem_link_list_size, chem_link_plane_atom_list_size, chem_link_plane_list_size, chem_link_tor_list_size, chem_link_tor_value_list_size, entity_keywords_list_size, entity_link_list_size, entity_list_size, entity_name_com_list_size, entity_name_sys_list_size, entity_poly_list_size, entity_poly_seq_list_size, entity_src_gen_list_size, entity_src_nat_list_size, entry_link_list_size, geom_angle_list_size, geom_bond_list_size, geom_contact_list_size, geom_hbond_list_size, geom_list_size, geom_torsion_list_size, get_atom_site_anisotrop_list, get_atom_site_block_n, get_atom_site_ext_block_n, get_atom_site_ext_list, get_atom_site_list, get_atom_type_list, get_chem_comp_angle_list, get_chem_comp_atom_list, get_chem_comp_bond_list, get_chem_comp_chir_atom_list, get_chem_comp_chir_list, get_chem_comp_link_list, get_chem_comp_list, get_chem_comp_plane_atom_list, get_chem_comp_plane_list, get_chem_comp_tor_list, get_chem_comp_tor_value_list, get_chem_link_angle_list, get_chem_link_bond_list, get_chem_link_chir_atom_list, get_chem_link_chir_list, get_chem_link_list, get_chem_link_plane_atom_list, get_chem_link_plane_list, get_chem_link_tor_list, get_chem_link_tor_value_list, get_entity_keywords_list, get_entity_link_list, get_entity_list, get_entity_name_com_list, get_entity_name_sys_list, get_entity_poly_list, get_entity_poly_seq_block_n, get_entity_poly_seq_list, get_entity_src_gen_list, get_entity_src_nat_list, get_entry_link_list, get_geom_angle_list, get_geom_bond_list, get_geom_contact_list, get_geom_hbond_list, get_geom_list, get_geom_torsion_list, get_pdbx_entity_assembly_list, get_pdbx_entity_name_list, get_pdbx_entity_src_syn_list, get_pdbx_nonpoly_scheme_list, get_pdbx_poly_seq_scheme_list, get_pdbx_prerelease_seq_list, get_pdbx_struct_sheet_hbond_list, get_struct_asym_list, get_struct_biol_gen_list, get_struct_biol_keywords_list, get_struct_biol_list, get_struct_biol_view_list, get_struct_conf_list, get_struct_conf_type_list, get_struct_conn_list, get_struct_conn_type_list, get_struct_keywords_list, get_struct_mon_details_list, get_struct_mon_nucl_list, get_struct_mon_prot_cis_list, get_struct_mon_prot_list, get_struct_ncs_dom_lim_list, get_struct_ncs_dom_list, get_struct_ncs_ens_gen_list, get_struct_ncs_ens_list, get_struct_ncs_oper_list, get_struct_ref_list, get_struct_ref_seq_dif_list, get_struct_ref_seq_list, get_struct_sheet_hbond_list, get_struct_sheet_list, get_struct_sheet_order_list, get_struct_sheet_range_list, get_struct_sheet_topology_list, get_struct_site_gen_list, get_struct_site_keywords_list, get_struct_site_list, get_struct_site_view_list, get_structure_list, pdbx_entity_assembly_list_size, pdbx_entity_name_list_size, pdbx_entity_src_syn_list_size, pdbx_nonpoly_scheme_list_size, pdbx_poly_seq_scheme_list_size, pdbx_prerelease_seq_list_size, pdbx_struct_sheet_hbond_list_size, struct_asym_list_size, struct_biol_gen_list_size, struct_biol_keywords_list_size, struct_biol_list_size, struct_biol_view_list_size, struct_conf_list_size, struct_conf_type_list_size, struct_conn_list_size, struct_conn_type_list_size, struct_keywords_list_size, struct_mon_details_list_size, struct_mon_nucl_list_size, struct_mon_prot_cis_list_size, struct_mon_prot_list_size, struct_ncs_dom_lim_list_size, struct_ncs_dom_list_size, struct_ncs_ens_gen_list_size, struct_ncs_ens_list_size, struct_ncs_oper_list_size, struct_ref_list_size, struct_ref_seq_dif_list_size, struct_ref_seq_list_size, struct_sheet_hbond_list_size, struct_sheet_list_size, struct_sheet_order_list_size, struct_sheet_range_list_size, struct_sheet_topology_list_size, struct_site_gen_list_size, struct_site_keywords_list_size, struct_site_list_size, struct_site_view_list_size, structure_list_size

Methods inherited from class org.omg.DsLSRMacromolecularStructure.EntryPOA

_all_interfaces, _invoke, _this, _this

Methods inherited from class org.omg.PortableServer.Servant

_default_POA, _get_delegate, _get_interface_def, _is_a, _non_existent, _object_id, _orb, _poa, _set_delegate, _this_object, _this_object

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EntryImpl

public EntryImpl(java.lang.String id,
                 EntryFoundry e)

EntryImpl

public EntryImpl(java.lang.String id,
                 EntryFoundry e,
                 java.lang.String path)

EntryImpl

public EntryImpl(java.lang.String id,
                 EntryFoundry e,
                 int k)

Method Detail

setDebug

public void setDebug(int d)

getEntryId

public java.lang.String getEntryId()

getFoundry

public EntryFoundry getFoundry()

setPresenceFlags

public void setPresenceFlags(int mod,
                             byte[] also)

The existing presence flags are set to the OR of the specified flags and the old value.

getPresenceFlags

public byte[] getPresenceFlags(int mod)

getPath

public java.lang.String getPath()

getKey

public int getKey()

Specified by:

getKey in class EntryMethodImpl

setDepositionDate

public void setDepositionDate(java.util.Date dt)

getDepositionDate

public java.util.Date getDepositionDate()

get_presence_flags

public byte[] get_presence_flags()
                          throws DataAccessException

DataAccessException

get_subentry_list

public org.omg.CosPropertyService.Property[] get_subentry_list()
                                                        throws DataAccessException

DataAccessException

initEntry

public boolean initEntry()
                  throws DataAccessException

Overide initEntry dummy method in MMSExpr generated EntryMethodImpl superclass Returns true if all variable values have been read when the file was inited.

Specified by:

initEntry in class EntryMethodImpl

DataAccessException

setCompositeSeqIndexList

public void setCompositeSeqIndexList(java.util.ArrayList sia)

Specified by:

setCompositeSeqIndexList in class EntryMethodImpl

setCompositeAtomIndexList

public void setCompositeAtomIndexList(java.util.ArrayList aia)

Specified by:

setCompositeAtomIndexList in class EntryMethodImpl

getList

public java.lang.Object[] getList(int sFlag)
                           throws DataAccessException

Specified by:

getList in class EntryMethodImpl

DataAccessException

getListSize

public int getListSize(int sFlag)
                throws DataAccessException

Specified by:

getListSize in class EntryMethodImpl

DataAccessException

getListBlock

public java.lang.Object[] getListBlock(int sFlag,
                                       int from,
                                       int to)
                                throws DataAccessException

Specified by:

getListBlock in class EntryMethodImpl

DataAccessException

cacheValue

public boolean cacheValue(java.lang.Object[] var,
                          int sFlag)

Specified by:

cacheValue in class EntryMethodImpl