/*
FILE:     erf_category.h
*/
/*
VERSION:  1.600
*/
/*
DATE:     2/3/2005
*/
/*
  Comments and Questions to: sw-help@rcsb.rutgers.edu
*/
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*/
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*/
#ifndef _ERF_CATEGORY_
#define _ERF_CATEGORY_

#define CIF_NDB_TYPE            1
#define CIF_SF_TYPE             2
#define CIF_COORDENCE_TYPE      3
#define CIF_DEPOSITION_TYPE     4

typedef struct {
        int  NdbTokenId;
        int  JrnlTokenId;
        int  NdbFieldNo;
        int  IsKey;
        int  *NdbTokenKeyFieldNo;
        int  nNdbTokenKeyFieldNo;
        int  deposition;
        char *NdbTokenName;
        char *JrnlTokenName_Type;
} ndb_token_match;

typedef struct {
        char *name;
        int  numNdbInfo;
        ndb_token_match *NdbInfo;
} CIF_KEYWORD;

typedef struct {
        int  xyz;
        int  sf;
        int  coordence;
        int  deposition;
        int  xray_or_nmr;
        int  general;
        int  transfer;
        char category[MxStrLen];
        // char *comment;
        int  nkeywords;
        int  *CifKeyField;
        int  nCifKeyField;
        CIF_KEYWORD *keywords;
} CIF_CATEGORY;

#define NDB_CIF_RMS_ITEMS 4

typedef struct {
  char type[MxStrLen];
  int  tokens[NDB_CIF_RMS_ITEMS];
  int  fields[NDB_CIF_RMS_ITEMS];
} NDBCIF_RMS_RECORDS;

typedef struct {
  char program[MxStrLen];
  char abbreviation[10];
} CIF_PROGRAMS;

typedef struct refmet_author_struct {
        char Program[100];
        char Author[1000];
} REFMET_AUTHOR;

typedef struct {
        char *refstr;
        char *ref;
        char refn[8][20];
} ref_trans_format;

extern int MxCategory;
extern CIF_CATEGORY *CifCategory;
extern int mxPrograms;
extern CIF_PROGRAMS *programs;
extern int mxRmsRecords;
extern NDBCIF_RMS_RECORDS *rmsRecords;
extern int Max_Refinement_Programs;
extern REFMET_AUTHOR *Refinement_programs;
extern int Max_Refs;
extern ref_trans_format *Refs;

extern int ndb_maxitlib_init(void);
extern CIF_CATEGORY *find_category(const char *category_name);
extern int read_cif_db(void);
extern int read_cif_rms(void);
extern int read_refinement_program(void);
extern int read_cif_refs(void);
extern ref_trans_format *find_ref(const char *publication, const int is_epublished);
extern void check_ndb_cif_mapping(void);

#endif
