T o D o R a s M o l v 2 . 7 . 3 ========================= Molecular Graphics Visualisation Tool 6 February 2005 Based on RasMol 2.6 by Roger Sayle Biomolecular Structures Group, Glaxo Wellcome Research & Development, Stevenage, Hertfordshire, UK Version 2.6, August 1995, Version 2.6.4, December 1998 Copyright (C) Roger Sayle 1992-1999 and Based on Mods by Author Version, Date Copyright Arne Mueller RasMol 2.6x1 May 98 (C) Arne Mueller 1998 Gary Grossman and RasMol 2.5-ucb Nov 95 (C) UC Regents/ModularCHEM Marco Molinaro RasMol 2.5-ucb Nov 96 Consortium 1995, 1996 Philippe Valadon RasTop 1.3 Aug 00 (C) Philippe Valadon 2000 Herbert J. RasMol 2.7.0 Mar 99 (C) Herbert J. Bernstein Bernstein RasMol 2.7.1 Jun 99 1998-2005 RasMol 2.7.1.1 Jan 01 RasMol 2.7.2 Aug 00 RasMol 2.7.2.1 Apr 01 RasMol 2.7.2.1.1 Jan 04 RasMol 2.7.3 Feb 05 with RasMol 2.7.3 incorporating changes by Clarice Chigbo, Ricky Chachra, and Mamoru Yamanishi and Incorporating Translations by Author Item Language Isabel Servan Martinez, 2.6 Manual Spanish Jose Miguel Fernandez Fernandez Jose Miguel Fernandez Fernandez 2.7.1 Manual Spanish Fernando Gabriel Ranea 2.7.1 menus and messages Spanish Jean-Pierre Demailly 2.7.1 menus and messages French Giuseppe Martini, Giovanni Paolella, 2.7.1 menus and messages Italian A. Davassi, M. Masullo, C. Liotto 2.7.1 help file This Release by Herbert J. Bernstein, Bernstein + Sons, P.O. Box 177, Bellport, NY, USA yaya@bernstein-plus-sons.com Copyright (C) Herbert J. Bernstein 1998-2005 The original RasMol manual was created by Roger Sayle. In July 1996, Dr. Margaret Wong of the Chemistry Department, Swinburne University of Technology, Australia, made extensive revisions to the RasMol 2.5 manual to accurately reflect the operation of RasMol 2.6. Eric Martz of the University of Massachusetts made further revisions. In May 1997, William McClure of Carnegie Mellon University reorganized the HTML version of the manual into multiple sections which could be downloaded quickly and added use of frames. Portions of the 2.7.1 version of the RasMol manual were derived with permission from William McClure's version using Roger Sayle's rasmol.doc for version 2.6.4 as the primary source. Changes were made in August 2000 for RasMol version 2.7.2, January 2001 for RasMol version 2.7.1.1, April 2001 for RasMol version 2.7.2.1 and February 2005 for RasMol version 2.7.3. Documentation Last Updated 19 April 2005 Edited by Herbert J. Bernstein and Frances C. Bernstein Translations Thanks to the efforts of Jose Miguel Fernandez Fernandez (Departamento de Bioquimica y Biologia Molecular. Universidad de Granada. Espana (jmfernan@ugr.es)) a translation of the Manual for Rasmol version 2.7.1 into Spanish is now available. La traduccion espanola del manual de la version de la Dra. Wong revisada por Eric Martz fue realizada por Isabel Servan Martinez y Jose Miguel Fernandez Fernandez. La actual traduccion del Manual de RasMol 2.7.1 ha sido realizada usando como base la anterior de RasMol 2.6 por Jose Miguel Fernandez Fernandez. Thanks to translations by Fernando Gabriel Ranea in late 2000 and early 2001, RasMol is now capable of rendering most menu items and messages in Spanish. Jean-Pierre Demailly provided French translations of menus and messages in January 2001. Giuseppe Martini and Giovanni Paolella with contributions by A. Davassi, M. Masullo and C. Liotto provided Italian translation of menus and messages in March 2001. _______________________________________________________________________________________ THIS IS A PRELIMINARY RELEASE INVOLVING EXTENSIVE MODIFICATIONS ***** USE WITH CAUTION ****** _______________________________________________________________________________________ IMPORTANT This version is based in directly on RasMol version 2.7.2.1.1, on RasMol version 2.7.2, on RasMol version 2.7.1, on RasMol version 2.6_CIF.2, on RasMol version 2.6x1, on RasMol version 2.6.4, and RasMol 2.5-ucb and 2.6-ucb. Please read the file NOTICE for important notices which apply to this package and for license terms (GPL or RASLIC). ________________________________________________________________________________ Combining RasMol Variants The first steps in combining RasMol variants have been performed. Much of the work of upgrading the documentation has been done. It remains to make the changes to prepdoc to generate the RasFrames version. Several source mod packages are being reviewed for inclusion. Features from other variants of RasMol will be considered for inclusion in RasMol 2.7.n if the features are particularly popular and if available resources (or helpful colleagues) make inclusion of those features feasible. When we are done, probably in the early fall, the resulting best version should be a reasonably stable and reliable single version combining most of the features of the major current variants of RasMol. Some other important things still to be done * Add P. Zhivkov's blurring to simulate surfaces. * Add OpenGL management of images. * Make native Mac OS X version. * Add smooth double buffering to switch molecules for movies. * Additional language variants. * Fix problems with very large zoom scale. * Add GUI toolbar interface. * Resolve color management issues (including auto-sensing bit depth). * Fix printing under windows. * Allow for longer names. * Add FAQ. * Finish incorporating A. Mueller's fixes for color management. * CIF and mmCIF write logic. * The read logic for large NMR structures on a Mac needs to be made to work. * The field widths for alternate conformer ID's and chains need to be extended to allow for the more flexible naming in mmCIF. * Resolve problem with interaction of stereo and shadows. * Allow writing of GIFs from high colour-resolution mode. * Improve memory management on Macs to allow larger structures. ________________________________________________________________________________ Updated 21 April 2005. Herbert J. Bernstein Bernstein + Sons, 5 Brewster Lane, Bellport, NY 11713-2803, USA yaya@bernstein-plus-sons.com +1-631-286-1339