Use of SPIDER and SPIRE in image reconstruction
Leith, A.,
Baxter, W. and
Frank, J.,
International Tables for Crystallography
(2012).
Vol. F,
ch. 19.8,
pp. 620-623
[ doi:10.1107/97809553602060000874 ]
and grants from NCRR/NIH P41 RR01219 (to JF), P01 GM064692 (to Robert M. Glaeser) and NIH R01 GM150601 (to AL). The authors thank Lila Iino-Rubenstein for assistance with the illustrations.
References
Baxter, W. T., Leith, A. &
Frank,
J. (2007 ...
Implementation of single-particle reconstruction in SPIRE
Leith, A.,
Baxter, W. and
Frank, J.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.8.4,
pp. 623-623
[ doi:10.1107/97809553602060000874 ]
to the Tk library).
References
Baxter, W. T., Leith, A. &
Frank,
J. (2007). SPIRE: the SPIDER reconstruction engine. J. Struct. Biol. 157, 56–63. Google Scholar
International Tables for Crystallography ...
Level 2: procedures
Leith, A.,
Baxter, W. and
Frank, J.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.8.3.2,
pp. 622-623
[ doi:10.1107/97809553602060000874 ]
[
more
results from section 19.8.3 in volume F]
Conclusion
Leith, A.,
Baxter, W. and
Frank, J.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.8.5,
pp. 623-623
[ doi:10.1107/97809553602060000874 ]
Å resolution, obtained by the protocol outlined here (LeBarron et al., 2008).
References
LeBarron, J., Grassucci, R. A., Shaikh, T. R., Baxter, W. T., Sengupta, J. &
Frank,
J. (2008). Exploration ...
Basic philosophy of single-particle reconstruction
Leith, A.,
Baxter, W. and
Frank, J.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.8.2,
pp. 620-621
[ doi:10.1107/97809553602060000874 ]
coefficient. For example, ribosome data may be split on the basis of intersubunit ratchet rotation, by presenting `ratcheted' and `non-ratcheted' ribosomes as references.
References
Penczek, P. A., Zhu, J., Schroeder, R. &
Frank,
J ...
Introduction
Leith, A.,
Baxter, W. and
Frank, J.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.8.1,
pp. 620-620
[ doi:10.1107/97809553602060000874 ]
a Creative Commons Attribution 2.5 Licence.
References
Baxter, W. T., Leith, A. &
Frank,
J. (2007). SPIRE: the SPIDER reconstruction engine. J. Struct. Biol. 157, 56–63. Google Scholar
Frank,
J. (2006). Editor ...
