Detection of errors in protein models
Dym, O.,
Eisenberg, D. and
Yeates, T. O.,
International Tables for Crystallography
(2012).
Vol. F,
ch. 21.3,
pp. 677-683
[ doi:10.1107/97809553602060000881 ]
&
Yeates, T.
O. (1993). Verification of protein structures: patterns of nonbonded atomic interactions . Protein Sci. 2, 1511–1519. Google Scholar
Curmi, P. M. G., Cascio, D., Sweet, R. M., Eisenberg, D. & Schreuder, H. (1992 ...
Selection of database
Dym, O.,
Eisenberg, D. and
Yeates, T. O.,
International Tables for Crystallography
(2012).
Vol. F,
Section 21.3.4,
pp. 679-679
[ doi:10.1107/97809553602060000881 ]
Motivation and introduction
Dym, O.,
Eisenberg, D. and
Yeates, T. O.,
International Tables for Crystallography
(2012).
Vol. F,
Section 21.3.1,
pp. 677-677
[ doi:10.1107/97809553602060000881 ]
Google Scholar
Colovos, C. &
Yeates, T.
O. (1993). Verification of protein structures: patterns of nonbonded atomic interactions . Protein Sci. 2, 1511–1519. Google Scholar
Laskowski, R. A., MacArthur, M. W., Moss ...
Specific examples
Dym, O.,
Eisenberg, D. and
Yeates, T. O.,
International Tables for Crystallography
(2012).
Vol. F,
Section 21.3.5.1,
pp. 679-682
[ doi:10.1107/97809553602060000881 ]
[
more
results from section 21.3.5 in volume F]
ERRAT
Dym, O.,
Eisenberg, D. and
Yeates, T. O.,
International Tables for Crystallography
(2012).
Vol. F,
Section 21.3.3.4,
pp. 678-679
[ doi:10.1107/97809553602060000881 ]
tool for identifying incorrectly built regions in protein models.
References
Colovos, C. &
Yeates, T.
O. (1993). Verification of protein structures: patterns of nonbonded atomic interactions . Protein Sci. 2, 1511 ...
[
more
results from section 21.3.3 in volume F]
Availability of software
Dym, O.,
Eisenberg, D. and
Yeates, T. O.,
International Tables for Crystallography
(2012).
Vol. F,
Section 21.3.7,
pp. 682-682
[ doi:10.1107/97809553602060000881 ]
Summary
Dym, O.,
Eisenberg, D. and
Yeates, T. O.,
International Tables for Crystallography
(2012).
Vol. F,
Section 21.3.6,
pp. 682-682
[ doi:10.1107/97809553602060000881 ]
Separating evaluation from refinement
Dym, O.,
Eisenberg, D. and
Yeates, T. O.,
International Tables for Crystallography
(2012).
Vol. F,
Section 21.3.2,
pp. 677-677
[ doi:10.1107/97809553602060000881 ]