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The DDL2 presentation
Westbrook, J. D., Berman, H. M. and Hall, S. R.  International Tables for Crystallography (2006). Vol. G, Section 2.6.2, p. 61 [ doi:10.1107/97809553602060000732 ]
The DDL2 presentation 2.6.2. The DDL2 presentation The syntax used in mmCIF data files and DDL2 dictionaries is a subset of the STAR syntax. Definitions in DDL2 dictionaries are encapsulated in named save frames (see Chapter 2.1 for a description of the STAR File syntax). A save frame is a ...

Introduction
Westbrook, J. D., Berman, H. M. and Hall, S. R.  International Tables for Crystallography (2006). Vol. G, Section 2.6.1, p. 61 [ doi:10.1107/97809553602060000732 ]
... in 1994. This approach, which later became known as DDL2 (Westbrook & Hall, 1995), employs a largely relational data model that adhered ... R. & Spadaccini, N. (1994). The STAR File: detailed specifications. J. Chem. Inf. Comput. Sci. 34, 505-508. Hall, S. R. ... File: a new format for electronic data transfer and archiving. J. Chem. Inf. Comput. Sci. 31, 326-333. Hall, S. ...

Specification of a relational dictionary definition language (DDL2)
Westbrook, J. D., Berman, H. M. and Hall, S. R.  International Tables for Crystallography (2006). Vol. G, ch. 2.6, pp. 61-70 [ doi:10.1107/97809553602060000732 ]
... in 1994. This approach, which later became known as DDL2 (Westbrook & Hall, 1995), employs a largely relational data model that adhered ... in the ITEM_EXAMPLES category. In Example 2.6.5.1, one value, 'J. Mol. Biol.', is specified, but multiple examples can be provided ... of revision must be specified. References Allen, F. H., Barnard, J. M., Cook, A. F. P. & Hall, S. R. (1995) ...

Building a structure-determination data pipeline
Westbrook, J. D., Yang, H., Feng, Z. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section 5.5.3.3, pp. 542-543 [ doi:10.1107/97809553602060000755 ]
Building a structure-determination data pipeline 5.5.3.3. Building a structure-determination data pipeline One goal of high-throughput structural genomics is the automatic capture of all the details of each step in the process of structure determination. Fig. 5.5.3.5 shows a simplified structure-determination data pipeline. The essential details of each ...
     [more results from section 5.5.3 in volume G]

Supporting other data formats and data delivery methods
Westbrook, J. D., Yang, H., Feng, Z. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section 5.5.2.3, p. 541 [ doi:10.1107/97809553602060000755 ]
... based (see also Section 5.3.8.2 ). References Greer, D. S., Westbrook, J. D. & Bourne, P. E. (2002). An ontology driven architecture ...
     [more results from section 5.5.2 in volume G]

Introduction
Westbrook, J. D., Yang, H., Feng, Z. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section 5.5.1, p. 539 [ doi:10.1107/97809553602060000755 ]
... Data Bank. Nature Struct. Biol. 10, 980. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov ... 235-242. Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F. Jr, Brice, M. D., Rodgers, ...

The use of mmCIF architecture for PDB data management
Westbrook, J. D., Yang, H., Feng, Z. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, ch. 5.5, pp. 539-543 [ doi:10.1107/97809553602060000755 ]
... The dictionary and data files based on this data ontology (Westbrook & Bourne, 2000) are expressed using Self-defining Text Archival and ... architecture (http://sw-tools.pdb.org/ ). The CIFPARSE_OBJ package (Tosic & Westbrook, 2000) provides high-level methods to read, write, validate and ... and manipulate the table objects. A companion package, CIFOBJ (Schirripa & Westbrook, 1996), provides an alternative representation of dictionary and DDL ...

DDL2 dictionary
Westbrook, J. D. and Hall, S. R.  International Tables for Crystallography (2006). Vol. G, ch. 4.10, pp. 473-478 [ doi:10.1107/97809553602060000750 ]
DDL2 dictionary This is version 2.1.3 of the dictionary definition language (DDL2). It provides a machine-readable description of the attributes of data items in the mmCIF and related dictionaries. This version of DDL is described in Chapter 2.6. International Tables for Crystallography DDL dictionary version 2.1.3 definitions Definitions are ...

Macromolecular dictionary (mmCIF)
Fitzgerald, P. M. D., Westbrook, J. D., Bourne, P. E., McMahon, B., Watenpaugh, K. D. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, ch. 4.5, pp. 295-443 [ doi:10.1107/97809553602060000745 ]
Macromolecular dictionary (mmCIF) This is version 2.0.09 of the macromolecular CIF dictionary (mmCIF). The history and philosophy of this dictionary are described in Chapter 1.1 and a commentary on its use may be found in Chapter 3.6. The data names defined here include a modified representation of those in the ...

Supporting software
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.4, p. 197 [ doi:10.1107/97809553602060000738 ]
Supporting software A3.6.2.4. Supporting software The RCSB/PDB has developed a set of software tools which support the PDB exchange dictionary framework (Chapter 5.5 ). These include PDB_EXTRACT, a tool to extract data from the output files of structure determination applications; ADIT, a web-based editor for data files based ...

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