PHENIX: a comprehensive Python-based system for macromolecular structure solution
Adams, P.D.,
Afonine, P.V.,
Bunkóczi, G.,
Chen, V.B.,
Davis, I.W.,
Echols, N.,
Headd, J.J.,
Hung, L.-W.,
Kapral, G.J.,
Grosse-Kunstleve, R.W.,
McCoy, A.J.,
Moriarty, N.W.,
Oeffner, R.,
Read, R.J.,
Richardson, D.C.,
Richardson, J.S.,
Terwilliger, T.C. and
Zwart, P.H.,
International Tables for Crystallography
(2012).
Vol. F,
ch. 18.11,
pp. 539-547
[ doi:10.1107/97809553602060000865 ]
(2003). Building hybrid systems with Boost.Python . C/C++ Users J. 21, 29–36. Google Scholar
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J.,
Hung,
L.-
W., Kapral, G. J., Grosse-Kunstleve ...
RNA and DNA
Adams, P.D.,
Afonine, P.V.,
Bunkóczi, G.,
Chen, V.B.,
Davis, I.W.,
Echols, N.,
Headd, J.J.,
Hung, L.-W.,
Kapral, G.J.,
Grosse-Kunstleve, R.W.,
McCoy, A.J.,
Moriarty, N.W.,
Oeffner, R.,
Read, R.J.,
Richardson, D.C.,
Richardson, J.S.,
Terwilliger, T.C. and
Zwart, P.H.,
International Tables for Crystallography
(2012).
Vol. F,
Section 18.11.4.3,
pp. 541-541
[ doi:10.1107/97809553602060000865 ]
[
more
results from section 18.11.4 in volume F]
Integrated structure determination
Adams, P.D.,
Afonine, P.V.,
Bunkóczi, G.,
Chen, V.B.,
Davis, I.W.,
Echols, N.,
Headd, J.J.,
Hung, L.-W.,
Kapral, G.J.,
Grosse-Kunstleve, R.W.,
McCoy, A.J.,
Moriarty, N.W.,
Oeffner, R.,
Read, R.J.,
Richardson, D.C.,
Richardson, J.S.,
Terwilliger, T.C. and
Zwart, P.H.,
International Tables for Crystallography
(2012).
Vol. F,
Section 18.11.7,
pp. 544-545
[ doi:10.1107/97809553602060000865 ]
A. J., Moriarty, N. W., Grosse-Kunstleve, R. W., Afonine, P. V., Zwart, P. H. &
Hung,
L.-
W. (2009). Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard . Acta Cryst. D 65, 582–601. Google ...
[
more
results from section 18.11.7 in volume F]
Substructure determination, phasing and molecular replacement
Adams, P.D.,
Afonine, P.V.,
Bunkóczi, G.,
Chen, V.B.,
Davis, I.W.,
Echols, N.,
Headd, J.J.,
Hung, L.-W.,
Kapral, G.J.,
Grosse-Kunstleve, R.W.,
McCoy, A.J.,
Moriarty, N.W.,
Oeffner, R.,
Read, R.J.,
Richardson, D.C.,
Richardson, J.S.,
Terwilliger, T.C. and
Zwart, P.H.,
International Tables for Crystallography
(2012).
Vol. F,
Section 18.11.3,
pp. 540-541
[ doi:10.1107/97809553602060000865 ]
[
more
results from section 18.11.3 in volume F]
Model and structure-factor manipulation and analysis
Adams, P.D.,
Afonine, P.V.,
Bunkóczi, G.,
Chen, V.B.,
Davis, I.W.,
Echols, N.,
Headd, J.J.,
Hung, L.-W.,
Kapral, G.J.,
Grosse-Kunstleve, R.W.,
McCoy, A.J.,
Moriarty, N.W.,
Oeffner, R.,
Read, R.J.,
Richardson, D.C.,
Richardson, J.S.,
Terwilliger, T.C. and
Zwart, P.H.,
International Tables for Crystallography
(2012).
Vol. F,
Section 18.11.5.1,
pp. 542-543
[ doi:10.1107/97809553602060000865 ]
[
more
results from section 18.11.5 in volume F]
Structure refinement
Adams, P.D.,
Afonine, P.V.,
Bunkóczi, G.,
Chen, V.B.,
Davis, I.W.,
Echols, N.,
Headd, J.J.,
Hung, L.-W.,
Kapral, G.J.,
Grosse-Kunstleve, R.W.,
McCoy, A.J.,
Moriarty, N.W.,
Oeffner, R.,
Read, R.J.,
Richardson, D.C.,
Richardson, J.S.,
Terwilliger, T.C. and
Zwart, P.H.,
International Tables for Crystallography
(2012).
Vol. F,
Section 18.11.6,
pp. 543-544
[ doi:10.1107/97809553602060000865 ]
[
more
results from section 18.11.6 in volume F]
Foundations
Adams, P.D.,
Afonine, P.V.,
Bunkóczi, G.,
Chen, V.B.,
Davis, I.W.,
Echols, N.,
Headd, J.J.,
Hung, L.-W.,
Kapral, G.J.,
Grosse-Kunstleve, R.W.,
McCoy, A.J.,
Moriarty, N.W.,
Oeffner, R.,
Read, R.J.,
Richardson, D.C.,
Richardson, J.S.,
Terwilliger, T.C. and
Zwart, P.H.,
International Tables for Crystallography
(2012).
Vol. F,
Section 18.11.1,
pp. 539-539
[ doi:10.1107/97809553602060000865 ]
& Grosse-Kunstleve, R. W. (2003). Building hybrid systems with Boost.Python . C/C++ Users J. 21, 29–36. Google Scholar
Adams, P. D., Grosse-Kunstleve, R. W.,
Hung,
L.-
W., Ioerger, T. R., McCoy, A. J., Moriarty, N. W., Read, R. J ...
[
more
results from section 18.11.1 in volume F]
Analysis of experimental data
Adams, P.D.,
Afonine, P.V.,
Bunkóczi, G.,
Chen, V.B.,
Davis, I.W.,
Echols, N.,
Headd, J.J.,
Hung, L.-W.,
Kapral, G.J.,
Grosse-Kunstleve, R.W.,
McCoy, A.J.,
Moriarty, N.W.,
Oeffner, R.,
Read, R.J.,
Richardson, D.C.,
Richardson, J.S.,
Terwilliger, T.C. and
Zwart, P.H.,
International Tables for Crystallography
(2012).
Vol. F,
Section 18.11.2,
pp. 540-540
[ doi:10.1107/97809553602060000865 ]
Conclusions
Adams, P.D.,
Afonine, P.V.,
Bunkóczi, G.,
Chen, V.B.,
Davis, I.W.,
Echols, N.,
Headd, J.J.,
Hung, L.-W.,
Kapral, G.J.,
Grosse-Kunstleve, R.W.,
McCoy, A.J.,
Moriarty, N.W.,
Oeffner, R.,
Read, R.J.,
Richardson, D.C.,
Richardson, J.S.,
Terwilliger, T.C. and
Zwart, P.H.,
International Tables for Crystallography
(2012).
Vol. F,
Section 18.11.8,
pp. 545-545
[ doi:10.1107/97809553602060000865 ]
