Four-dimensional cryo-electron microscopy at quasi-atomic resolution: IMAGIC 4D
van Heel, M.,
Portugal, R.,
Rohou, A.,
Linnemayr, C.,
Bebeacua, C.,
Schmidt, R.,
Grant, T. and
Schatz, M.,
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(2012).
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ch. 19.9,
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van Heel,
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Software parallelization
van Heel, M.,
Portugal, R.,
Rohou, A.,
Linnemayr, C.,
Bebeacua, C.,
Schmidt, R.,
Grant, T. and
Schatz, M.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.9.4,
pp. 625-625
[ doi:10.1107/97809553602060000875 ]
The IMAGIC software system
van Heel, M.,
Portugal, R.,
Rohou, A.,
Linnemayr, C.,
Bebeacua, C.,
Schmidt, R.,
Grant, T. and
Schatz, M.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.9.2,
pp. 624-624
[ doi:10.1107/97809553602060000875 ]
MSA and its parallelization
van Heel, M.,
Portugal, R.,
Rohou, A.,
Linnemayr, C.,
Bebeacua, C.,
Schmidt, R.,
Grant, T. and
Schatz, M.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.9.8,
pp. 626-626
[ doi:10.1107/97809553602060000875 ]
of the normal IMAGIC distribution.
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van Heel, M.,
Portugal, R.,
Rohou, A.,
Linnemayr, C.,
Bebeacua, C.,
Schmidt, R.,
Grant, T. and
Schatz, M.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.9.10,
pp. 627-627
[ doi:10.1107/97809553602060000875 ]
IMAGIC `4D' processing/data format
van Heel, M.,
Portugal, R.,
Rohou, A.,
Linnemayr, C.,
Bebeacua, C.,
Schmidt, R.,
Grant, T. and
Schatz, M.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.9.3,
pp. 624-625
[ doi:10.1107/97809553602060000875 ]
Discussion
van Heel, M.,
Portugal, R.,
Rohou, A.,
Linnemayr, C.,
Bebeacua, C.,
Schmidt, R.,
Grant, T. and
Schatz, M.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.9.11,
pp. 627-627
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Parallel automatic particle picking
van Heel, M.,
Portugal, R.,
Rohou, A.,
Linnemayr, C.,
Bebeacua, C.,
Schmidt, R.,
Grant, T. and
Schatz, M.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.9.6,
pp. 625-625
[ doi:10.1107/97809553602060000875 ]
views in all possible orientations in an extensive stack of input images (the massive calculations involved exploit MPI parallelization).
References
Boekema, E. J., Berden, J. A. &
van Heel,
M. G. (1986). Structure ...
Introduction
van Heel, M.,
Portugal, R.,
Rohou, A.,
Linnemayr, C.,
Bebeacua, C.,
Schmidt, R.,
Grant, T. and
Schatz, M.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.9.1,
pp. 624-624
[ doi:10.1107/97809553602060000875 ]
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M. (2004). Release factor 3 seen on the ribosome during termination of protein synthesis ...
Parallel multi-reference alignments and reference bias
van Heel, M.,
Portugal, R.,
Rohou, A.,
Linnemayr, C.,
Bebeacua, C.,
Schmidt, R.,
Grant, T. and
Schatz, M.,
International Tables for Crystallography
(2012).
Vol. F,
Section 19.9.7,
pp. 626-626
[ doi:10.1107/97809553602060000875 ]
Heel & Schatz, 2005).
References
Boekema, E. J., Berden, J. A. &
van Heel,
M. G. (1986). Structure of mitochondrial F1-ATPase studied by electron microscopy and image processing. Biochim. Biophys. Acta, 851 ...
