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 Results for DC.creator="F." AND DC.creator="A." AND DC.creator="Quiocho" in section 23.3.4 of volume F
Protein-nucleic acid interactions
Hodel, A. E. and Quiocho, F. A.  International Tables for Crystallography (2012). Vol. F, Section 23.3.4, pp. 757-760 [ doi:10.1107/97809553602060000892 ]
... and the information `programmed' into the cell within its genome. A classic example of such a process is the response of the bacteria Escherichia coli to ... in the surrounding media through the regulation of gene expression. A simple case of this interaction is found in the ...

Single-stranded sequence-nonspecific RNA-protein interactions
Hodel, A. E. and Quiocho, F. A.  International Tables for Crystallography (2012). Vol. F, Section 23.3.4.6, p. 760 [ doi:10.1107/97809553602060000892 ]
... 23.3.4.6. Single-stranded sequence-nonspecific RNA-protein interactions There is a single example of a single-stranded RNA-protein complex which is sequence-nonspecific. The structure of the vaccinia RNA methyltransferase VP39 bound to a 5'm7G-capped RNA hexamer reveals a mechanism of ...

Stem loops
Hodel, A. E. and Quiocho, F. A.  International Tables for Crystallography (2012). Vol. F, Section 23.3.4.5, pp. 759-760 [ doi:10.1107/97809553602060000892 ]
... synthetases, they all appear to have evolved from or towards a very similar general fold (Burd & Dreyfuss, 1994). This fold ... RNP domain found in numerous RNA-binding proteins, consists of a [beta]-sheet surrounded on one side by [alpha]-helices and ... Although each of these subsets of RNA-binding domains has a different topology and most probably bind to RNA with ...

Transfer RNA
Hodel, A. E. and Quiocho, F. A.  International Tables for Crystallography (2012). Vol. F, Section 23.3.4.4, p. 759 [ doi:10.1107/97809553602060000892 ]
... et al., 1991), the effects of RNA's preference for A-form helices on recognition are immediately apparent. The proteins make ... of the tRNA is broken, and the CCA acceptor makes a dramatic hairpin turn into the enzyme active site. References Cusack, S., Yaremchuk, A. & Tukalo, M. (1996a). The crystal structure of the ...

RNA
Hodel, A. E. and Quiocho, F. A.  International Tables for Crystallography (2012). Vol. F, Section 23.3.4.3, p. 759 [ doi:10.1107/97809553602060000892 ]
... RNA Although RNA and DNA are chemically similar, RNA presents a much greater variety of shapes and surfaces compared to the ... structural details of protein-RNA interactions (Nagai, 1996). Only a handful of protein-RNA complex structures have been determined. These ... four tRNA-protein complexes, two stem-loop-protein complexes and a capped single-stranded RNA-protein complex. References Nagai, K. ( ...

Single-stranded sequence-nonspecific DNA-protein interactions
Hodel, A. E. and Quiocho, F. A.  International Tables for Crystallography (2012). Vol. F, Section 23.3.4.2, p. 759 [ doi:10.1107/97809553602060000892 ]
... Single-stranded sequence-nonspecific DNA-protein interactions There have been a few reports of single-stranded DNA-protein complex structures, all ... the sequence-nonspecific recognition of DNA. In the binding of a tetranucleotide to the exonuclease active site of the DNA polymerase ... binding, where the protein simply recognizes the phosphate backbone of a single-stranded coil. The protein also appears to form ...

The DNA double helix
Hodel, A. E. and Quiocho, F. A.  International Tables for Crystallography (2012). Vol. F, Section 23.3.4.1, pp. 757-759 [ doi:10.1107/97809553602060000892 ]
... and the information `programmed' into the cell within its genome. A classic example of such a process is the response of the bacteria Escherichia coli to ... in the surrounding media through the regulation of gene expression. A simple case of this interaction is found in the ...

The recognition of alkylated bases
Hodel, A. E. and Quiocho, F. A.  International Tables for Crystallography (2012). Vol. F, Section 23.3.4.7, p. 760 [ doi:10.1107/97809553602060000892 ]
... bases The complex of VP39 with capped RNA also illustrates a final example of the diversity of protein-ligand interactions in ... methylguanosine cap. When guanosine is methylated at the N7 position, a positive charge is introduced to the [pi]-ring system of the base. Eukaryotic cells utilize the methylation of a guanosine base at the N7 position as a tag ...

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