modify your search
 Results for DC.creator="J." AND DC.creator="Pontius" in section 21.2.2 of volume F
Deviations from standard atomic volumes as a quality measure for protein crystal structures
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, Section 21.2.2.2.3, pp. 664-665 [ doi:10.1107/97809553602060000880 ]
... Abagyan & Totrov, 1997). Here, we describe the approach of Pontius et al. (1996), in which deviations from standard atomic volumes ... of the dividing plane P between two atoms i and j, with van der Waals radii and , respectively, separated by a ... significant deviations from these ranges are flagged. The program PROVE (Pontius et al., 1996) implements such an approach using the ...

Validation using knowledge-based interaction potentials and profiles
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, Section 21.2.2.2.2, pp. 663-664 [ doi:10.1107/97809553602060000880 ]
... volume-based Z scores. References Eisenberg, D., Luthy, R. & Bowie, J. U. (1997). VERIFY3D: assessment of protein models with three ... . Novel knowledge-based mean force potential at atomic level. J. Mol. Biol. 267, 207-222. Melo, F. & Feytmans, E. (1998 ... Assessing protein structures with a non-local atomic interaction energy. J. Mol. Biol. 277, 1141-1152. Sippl, M. J. (1990) ...

Validation of stereochemical and non-bonded parameters
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, Section 21.2.2.2.1, p. 663 [ doi:10.1107/97809553602060000880 ]
... bonded and geometrical features. Biopolymers, 22, 2577-2637. Kleywegt, G. J. & Jones, T. A. (1996). Phi/psi-chology: Ramachandran revisited. ... Laskowski, R. A., MacArthur, M. W., Moss, D. S. & Thornton, J. M. (1993). PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26, 283-291. Morris, A. L., MacArthur, ...

Comparisons against standard values derived from surveys of other macromolecules
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, Section 21.2.2.2, pp. 663-665 [ doi:10.1107/97809553602060000880 ]
... Abagyan & Totrov, 1997). Here, we describe the approach of Pontius et al. (1996), in which deviations from standard atomic volumes ... of the dividing plane P between two atoms i and j, with van der Waals radii and , respectively, separated by a ... significant deviations from these ranges are flagged. The program PROVE (Pontius et al., 1996) implements such an approach using the ...

Comparisons against standard values derived from crystals of small molecules
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, Section 21.2.2.1, pp. 662-663 [ doi:10.1107/97809553602060000880 ]
... Peters, B. G., Kennard, O., Motherwell, W. D. S., Rodgers, J. R. & Watson, D. G. (1979). The Cambridge Crystallographic Data ... Berman, H. M., Olson, W. K., Beveridge, D. L., Westbrook, J., Gelbin, A., Demeny, T., Hsieh, S.-H., Srinivasan, A. R. ... relational database of three-dimensional structures of nucleic acids. Biophys. J. 63, 751-759. Berman, H. M., Westbrook, J., Feng, ...

Validating the geometric and stereochemical parameters of the model
Wodak, S. J., Vagin, A. A., Richelle, J., Das, U., Pontius, J. and Berman, H. M.  International Tables for Crystallography (2012). Vol. F, Section 21.2.2, pp. 662-665 [ doi:10.1107/97809553602060000880 ]
... Abagyan & Totrov, 1997). Here, we describe the approach of Pontius et al. (1996), in which deviations from standard atomic volumes ... of the dividing plane P between two atoms i and j, with van der Waals radii and , respectively, separated by a ... significant deviations from these ranges are flagged. The program PROVE (Pontius et al., 1996) implements such an approach using the ...

powered by swish-e
























































to end of page
to top of page