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 Results for DC.creator="R." AND DC.creator="Farid" in section 18.10.3 of volume F
Automation of refinement tasks
Bell, J.A., Cao, Y., Gunn, J.R., Day, T., Gallicchio, E., Zhou, Z., Levy, R. and Farid, R.  International Tables for Crystallography (2012). Vol. F, Section 18.10.3.3, p. 536 [ doi:10.1107/97809553602060000864 ]
Automation of refinement tasks 18.10.3.3. Automation of refinement tasks As well as executing through the graphical interface, most PrimeX tasks can be run through command-line execution, so these tasks can be easily integrated into workflows. Future development will be focused on combining multiple tasks and diagnostic information into larger automated ...

Molecular models consistent with X-ray data
Bell, J.A., Cao, Y., Gunn, J.R., Day, T., Gallicchio, E., Zhou, Z., Levy, R. and Farid, R.  International Tables for Crystallography (2012). Vol. F, Section 18.10.3.2, pp. 535-536 [ doi:10.1107/97809553602060000864 ]
... the treatment (J. A. Bell, unpublished work). References Engh, R. A. & Huber, R. (1991). Accurate bond and angle parameters for X-ray ...

van der Waals interactions
Bell, J.A., Cao, Y., Gunn, J.R., Day, T., Gallicchio, E., Zhou, Z., Levy, R. and Farid, R.  International Tables for Crystallography (2012). Vol. F, Section 18.10.3.1.3, p. 535 [ doi:10.1107/97809553602060000864 ]
van der Waals interactions 18.10.3.1.3. van der Waals interactions The full OPLS force field includes terms for repulsive and attractive non-bonded interactions. Most significant for restraints during crystallographic refinement is the utilization of the full repulsive term for non-bonded interactions, unlike other leading biological crystal structure refinement packages where ...

Achieving the mission of PrimeX
Bell, J.A., Cao, Y., Gunn, J.R., Day, T., Gallicchio, E., Zhou, Z., Levy, R. and Farid, R.  International Tables for Crystallography (2012). Vol. F, Section 18.10.3, pp. 535-536 [ doi:10.1107/97809553602060000864 ]
... Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998 ... for macromolecular structure determination. Acta Cryst. D54, 905-921. Engh, R. A. & Huber, R. (1991). Accurate bond and angle ...

Hydrogen atoms
Bell, J.A., Cao, Y., Gunn, J.R., Day, T., Gallicchio, E., Zhou, Z., Levy, R. and Farid, R.  International Tables for Crystallography (2012). Vol. F, Section 18.10.3.1.1, p. 535 [ doi:10.1107/97809553602060000864 ]
... Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998 ...

Molecular models and computational chemistry
Bell, J.A., Cao, Y., Gunn, J.R., Day, T., Gallicchio, E., Zhou, Z., Levy, R. and Farid, R.  International Tables for Crystallography (2012). Vol. F, Section 18.10.3.1, p. 535 [ doi:10.1107/97809553602060000864 ]
... Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T. & Warren, G. L. (1998 ... J. L., Zhou, Z., Gallicchio, E., Himmel, D. M., Friesner, R. A., Arnold, E. & Levy, R. M. (2008). Exploring ...

Electrostatics and implicit solvation
Bell, J.A., Cao, Y., Gunn, J.R., Day, T., Gallicchio, E., Zhou, Z., Levy, R. and Farid, R.  International Tables for Crystallography (2012). Vol. F, Section 18.10.3.1.2, p. 535 [ doi:10.1107/97809553602060000864 ]
... J. L., Zhou, Z., Gallicchio, E., Himmel, D. M., Friesner, R. A., Arnold, E. & Levy, R. M. (2008). Exploring structural variability in X-ray crystallographic ... sampling. Acta Cryst. D64, 383-396. Zhu, K., Shirts, M. R. & Friesner, R. A. (2007). Improved methods for side ...

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