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 Results for DC.creator="R." AND DC.creator="Oeffner" in section 18.11.4 of volume F
Maps, models and avoiding bias
Adams, P.D., Afonine, P.V., Bunkóczi, G., Chen, V.B., Davis, I.W., Echols, N., Headd, J.J., Hung, L.-W., Kapral, G.J., Grosse-Kunstleve, R.W., McCoy, A.J., Moriarty, N.W., Oeffner, R., Read, R.J., Richardson, D.C., Richardson, J.S., Terwilliger, T.C. and Zwart, P.H.  International Tables for Crystallography (2012). Vol. F, Section 18.11.4.4, p. 542 [ doi:10.1107/97809553602060000865 ]
... 144-150. Lunin, V. Yu. & Skovoroda, T. P. (1995). R-free likelihood-based estimates of errors for phases calculated from ... and probably less bias. Acta Cryst. D65, 921-931. Read, R. J. (1986). Improved Fourier coefficients for maps using phases ... Acta Cryst. A42, 140-149. Terwilliger, T. C., Grosse-Kunstleve, R. W., Afonine, P. V., Moriarty, N. W., Zwart, P. ...

RNA and DNA
Adams, P.D., Afonine, P.V., Bunkóczi, G., Chen, V.B., Davis, I.W., Echols, N., Headd, J.J., Hung, L.-W., Kapral, G.J., Grosse-Kunstleve, R.W., McCoy, A.J., Moriarty, N.W., Oeffner, R., Read, R.J., Richardson, D.C., Richardson, J.S., Terwilliger, T.C. and Zwart, P.H.  International Tables for Crystallography (2012). Vol. F, Section 18.11.4.3, p. 541 [ doi:10.1107/97809553602060000865 ]
... S., Schneider, B., Murray, L. W., Kapral, G. J., Immormino, R. M., Headd, J. J., Richardson, D. C., Ham, D., Hershkovits ...

Ligand fitting
Adams, P.D., Afonine, P.V., Bunkóczi, G., Chen, V.B., Davis, I.W., Echols, N., Headd, J.J., Hung, L.-W., Kapral, G.J., Grosse-Kunstleve, R.W., McCoy, A.J., Moriarty, N.W., Oeffner, R., Read, R.J., Richardson, D.C., Richardson, J.S., Terwilliger, T.C. and Zwart, P.H.  International Tables for Crystallography (2012). Vol. F, Section 18.11.4.2, p. 541 [ doi:10.1107/97809553602060000865 ]
Ligand fitting 18.11.4.2. Ligand fitting Phenix.ligandfit is a tool for fitting a flexible ligand into anelectron-density map (Terwilliger et al., 2006). The key approaches used are breaking the ligand into its component rigid-body parts, finding where each of these can be placed into density, tracing the remainder of ...

Model building
Adams, P.D., Afonine, P.V., Bunkóczi, G., Chen, V.B., Davis, I.W., Echols, N., Headd, J.J., Hung, L.-W., Kapral, G.J., Grosse-Kunstleve, R.W., McCoy, A.J., Moriarty, N.W., Oeffner, R., Read, R.J., Richardson, D.C., Richardson, J.S., Terwilliger, T.C. and Zwart, P.H.  International Tables for Crystallography (2012). Vol. F, Section 18.11.4.1, p. 541 [ doi:10.1107/97809553602060000865 ]
Model building 18.11.4.1. Model building Phenix.find_helices_strands will rapidly build a secondary-structure-only model into a map or very rapidly trace the polypeptide backbone of a model into a map. To build secondary structure in a map, phenix.find_helices_strands identifies [alpha]-helical regions and [beta]-strand segments, models ...

Model building, ligand fitting and nucleic acids
Adams, P.D., Afonine, P.V., Bunkóczi, G., Chen, V.B., Davis, I.W., Echols, N., Headd, J.J., Hung, L.-W., Kapral, G.J., Grosse-Kunstleve, R.W., McCoy, A.J., Moriarty, N.W., Oeffner, R., Read, R.J., Richardson, D.C., Richardson, J.S., Terwilliger, T.C. and Zwart, P.H.  International Tables for Crystallography (2012). Vol. F, Section 18.11.4, pp. 541-542 [ doi:10.1107/97809553602060000865 ]
... 144-150. Lunin, V. Yu. & Skovoroda, T. P. (1995). R-free likelihood-based estimates of errors for phases calculated from ... and probably less bias. Acta Cryst. D65, 921-931. Read, R. J. (1986). Improved Fourier coefficients for maps using phases ... S., Schneider, B., Murray, L. W., Kapral, G. J., Immormino, R. M., Headd, J. J., Richardson, D. C., Ham, D., ...

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