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 Results for DC.creator="S." AND DC.creator="Ludtke" in section 19.10.3 of volume F
Refinement (e2refine.py)
Ludtke, S.  International Tables for Crystallography (2012). Vol. F, Section 19.10.3.6, p. 631 [ doi:10.1107/97809553602060000876 ]
... three-dimensional refinement. This process is largely unchanged from EMAN1 (Ludtke et al., 1999), apart from minor improvements designed to speed ... the various parameters is provided through the workflow interface. References Ludtke, S. J., Baldwin, P. R. & Chiu, W. (1999). EMAN: ...

Initial model generation (e2initialmodel.py)
Ludtke, S.  International Tables for Crystallography (2012). Vol. F, Section 19.10.3.5, p. 631 [ doi:10.1107/97809553602060000876 ]
Initial model generation (e2initialmodel.py) 19.10.3.5. Initial model generation (e2initialmodel.py) There are a variety of opinions in the single-particle reconstruction community about how initial models should be generated. Briefly, the most widely used methods are: common lines with reference-free class averages (van Heel, 1987), random conical tilt (Radermacher et al. ...

Reference-free two-dimensional classification (e2refine2d.py)
Ludtke, S.  International Tables for Crystallography (2012). Vol. F, Section 19.10.3.4, p. 631 [ doi:10.1107/97809553602060000876 ]
... particles. These can be used to help identify the particle's symmetry and any problems with preferred orientation or particle flexibility ... D. H., Song, J. L., Chuang, D. T., Chiu, W. & Ludtke, S. J. (2006). An expanded conformation of single-ring ...

Single-particle reconstruction
Ludtke, S.  International Tables for Crystallography (2012). Vol. F, Section 19.10.3, p. 631 [ doi:10.1107/97809553602060000876 ]
... user intervention, a process which was quite challenging in EMAN1 (Ludtke et al., 1999). The automated process is supplemented by ... particles. These can be used to help identify the particle's symmetry and any problems with preferred orientation or particle flexibility ... three-dimensional refinement. This process is largely unchanged from EMAN1 (Ludtke et al., 1999), apart from minor improvements designed to ...

Contrast transfer function/image evaluation (e2ctf.py)
Ludtke, S.  International Tables for Crystallography (2012). Vol. F, Section 19.10.3.2, p. 631 [ doi:10.1107/97809553602060000876 ]
... user intervention, a process which was quite challenging in EMAN1 (Ludtke et al., 1999). The automated process is supplemented by a fully featured GUI for manual image assessment. References Ludtke, S. J., Baldwin, P. R. & Chiu, W. (1999). EMAN: ...

Particle selection (e2boxer.py)
Ludtke, S.  International Tables for Crystallography (2012). Vol. F, Section 19.10.3.1, p. 631 [ doi:10.1107/97809553602060000876 ]
... G., Rothnagel, R., Muller, D., Landsberg, M. J., Pantelic, R. S., McDowall, A., Pailthorpe, B., Young, P. R., Hankamer, B. & Banks ... F., de Haas, F., Hall, R. J., Kriegman, D. J., Ludtke, S. J., Mallick, S. P., Penczek, P. A., Roseman, A. ...

Grouping particles into sets
Ludtke, S.  International Tables for Crystallography (2012). Vol. F, Section 19.10.3.3, p. 631 [ doi:10.1107/97809553602060000876 ]
Grouping particles into sets 19.10.3.3. Grouping particles into sets Once images have been preprocessed, the user is given another, optional, opportunity to examine the images of individual particles, now in Wiener-filtered form, to identify any `bad' particles which should be eliminated from further processing. In addition, several values are provided ...

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