modify your search
 Results for DC.creator="V." AND DC.creator="S." AND DC.creator="Lamzin" in section 18.8.3 of volume F
Solvent building
Lamzin, V. S., Perrakis, A. and Wilson, K. S.  International Tables for Crystallography (2012). Vol. F, Section 18.8.3.5, pp. 527-528 [ doi:10.1107/97809553602060000862 ]
Solvent building 18.8.3.5. Solvent building In this application, the protein model (together with bound metals, ligands or nucleic acids) is not rebuilt during refinement. Instead, only the solvent structure is continuously updated. Since ordered solvent in a typical crystal structure comprises about 10% of the model, improvement of solvent indirectly improves ...

Building bound ligands
Lamzin, V. S., Perrakis, A. and Wilson, K. S.  International Tables for Crystallography (2012). Vol. F, Section 18.8.3.4, p. 527 [ doi:10.1107/97809553602060000862 ]
... refinement. References Evrard, G. X., Langer, G. G., Perrakis, A. & Lamzin, V. S. (2007). Assessment of automatic ligand building in ARP/ ...

Building polynucleotide fragments
Lamzin, V. S., Perrakis, A. and Wilson, K. S.  International Tables for Crystallography (2012). Vol. F, Section 18.8.3.3, p. 527 [ doi:10.1107/97809553602060000862 ]
... expected to scatter strongly and be easier to discriminate (Hattne & Lamzin, 2008). The numerical algorithm is based on the use ... residue, while a nucleotide unit has five. References Hattne, J. & Lamzin, V. S. (2008). Pattern-recognition-based detection of planar ...

Recognition of secondary structural elements
Lamzin, V. S., Perrakis, A. and Wilson, K. S.  International Tables for Crystallography (2012). Vol. F, Section 18.8.3.2, p. 527 [ doi:10.1107/97809553602060000862 ]
Recognition of secondary structural elements 18.8.3.2. Recognition of secondary structural elements At a resolution of 3.0 and worse, where electron-density maps lack atomic features, ARP/wARP uses a different algorithm to build an initial model. Instead of free atoms, sparse map grid points with ~1 spacing are selected as potential ...

Iterative protein-model building
Lamzin, V. S., Perrakis, A. and Wilson, K. S.  International Tables for Crystallography (2012). Vol. F, Section 18.8.3.1, pp. 526-527 [ doi:10.1107/97809553602060000862 ]
... by matching the electron density that surrounds each potential pair (Lamzin & Wilson, 1997) to that pre-computed for true C[alpha ... peptide units that will be difficult to identify. References Cohen, S. X., Morris, R. J., Fernandez, F. J., Ben Jelloul, M., Kakaris, M., Parthasarathy, V., Lamzin, V. S., Kleywegt, G. J. & Perrakis, A. (2004) ...

ARP/wARP applications
Lamzin, V. S., Perrakis, A. and Wilson, K. S.  International Tables for Crystallography (2012). Vol. F, Section 18.8.3, pp. 526-528 [ doi:10.1107/97809553602060000862 ]
... building and refinement; (iv) building flexible loops in alternate conformations; (v) building DNA or RNA polynucleotide fragments; (vi) fully automated placement ... by matching the electron density that surrounds each potential pair (Lamzin & Wilson, 1997) to that pre-computed for true C[alpha ... expected to scatter strongly and be easier to discriminate (Hattne & Lamzin, 2008). The numerical algorithm is based on the ...

powered by swish-e
























































to end of page
to top of page