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How to handle the solvent density
Westbrook, E. M.  International Tables for Crystallography (2012). Vol. F, Section 5.2.7, p. 156 [ doi:10.1107/97809553602060000817 ]
... Methods Enzymol. 114, 176-187. Quiocho, F. A. & Richards, F. M. (1964). Intermolecular cross linking of a protein in the ...

Data exchange and format translation
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.1, pp. 195-196 [ doi:10.1107/97809553602060000738 ]
Data exchange and format translation A3.6.2.1. Data exchange and format translation The majority of crystallographic and structural concepts embodied in the PDB are already well described in the mmCIF data dictionary. However, while there is a conceptual description of most crystallographic information in PDB-format files within the mmCIF dictionary, the ...

Supporting software
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.4, p. 197 [ doi:10.1107/97809553602060000738 ]
Supporting software A3.6.2.4. Supporting software The RCSB/PDB has developed a set of software tools which support the PDB exchange dictionary framework (Chapter 5.5 ). These include PDB_EXTRACT, a tool to extract data from the output files of structure determination applications; ADIT, a web-based editor for data files based ...

Protein production
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.3.3, p. 197 [ doi:10.1107/97809553602060000738 ]
Protein production A3.6.2.3.3. Protein production The International Task Force on Deposition, Archiving, and Curation of Primary Information for Structural Genomics (Section A3.6.2.2) has also provided recommendations for the deposition of information about protein production. These recommendations are summarized at http://deposit.pdb.org/mmcif/sg-data/protprod.html . These data extensions have been ...

Extensions for structural genomics
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.2, p. 197 [ doi:10.1107/97809553602060000738 ]
... been incorporated into the PDB exchange dictionary. References Berman, H. M. (2001). Chair. Report of the task force on the ...

NMR
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.3.1, p. 197 [ doi:10.1107/97809553602060000738 ]
... archiving. J. Chem. Inf. Comput. Sci. 31, 326-333. Ulrich, E. L., Markley, J. L. & Kyogoku, Y. (1989). Creation of ...

Noncrystallographic methods
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.3, p. 197 [ doi:10.1107/97809553602060000738 ]
... Comput. Sci. 31, 326-333. Henrick, K., Newman, R., Tagari, M. & Chagoyen, M. (2003). EMDep: a web-based system for the deposition ... macromolecular structural information. J. Struct. Biol. 144, 228-237. Ulrich, E. L., Markley, J. L. & Kyogoku, Y. (1989). Creation ...

Cryo-electron microscopy
Westbrook, J. D., Henrick, K., Ulrich, E. L. and Berman, H. M.  International Tables for Crystallography (2006). Vol. G, Section a3.6.2.3.2, p. 197 [ doi:10.1107/97809553602060000738 ]
... mmcif_iims.dic/Index/ ). References Henrick, K., Newman, R., Tagari, M. & Chagoyen, M. (2003). EMDep: a web-based system for the deposition ...

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