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Conclusions
Brunger, A. T., Adams, P. D., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J.-S., Pannu, N. S., Read, R. J., Rice, L. M. and Simonson, T.  International Tables for Crystallography (2012). Vol. F, Section 18.6.10, p. 517 [ doi:10.1107/97809553602060000860 ]
... H. & Jensen, L. H. (1989). X-ray Structure Determination, p. 33. New York: Wiley Interscience. International Tables for Crystallography (2012). Vol. F, ch. 18.6, p. 517 © International Union of Crystallography 2012 | home | resources | advanced search ...

Conclusions
Brunger, A. T., Adams, P. D. and Rice, L. M.  International Tables for Crystallography (2012). Vol. F, Section 18.2.8, p. 472 [ doi:10.1107/97809553602060000856 ]
... obtained by weak molecular-replacement solutions (Rice & Brünger, 1994; Adams et al., 1997, 1999). Simulated annealing can also be ... release of the software suite is available upon request. References Adams, P. D., Pannu, N. S., Read, R. J. & Brünger, ...

Ensemble models
Brunger, A. T., Adams, P. D. and Rice, L. M.  International Tables for Crystallography (2012). Vol. F, Section 18.2.7, pp. 471-472 [ doi:10.1107/97809553602060000856 ]
... disorder with experimental crystallographic phases. Science, 271, 72-77. Gros, P., van Gunsteren, W. F. & Hol, W. G. J. (1990). ...

Multi-start refinement and structure-factor averaging
Brunger, A. T., Adams, P. D. and Rice, L. M.  International Tables for Crystallography (2012). Vol. F, Section 18.2.6, p. 471 [ doi:10.1107/97809553602060000856 ]
... single model. It should also produce better estimates of and D for maximum-likelihood targets and for -weighted electron-density maps ... International Tables for Crystallography (2012). Vol. F, ch. 18.2, p. 471 © International Union of Crystallography 2012 | home | resources | advanced search ...

Examples
Brunger, A. T., Adams, P. D. and Rice, L. M.  International Tables for Crystallography (2012). Vol. F, Section 18.2.5, pp. 470-471 [ doi:10.1107/97809553602060000856 ]
... al., 1989; Kuriyan et al., 1989; Rice & Brünger, 1994; Adams et al., 1997). In another realistic test case (Adams et al., 1999), a series of models for the aspartic ... maximum-likelihood target (Kleywegt & Brünger, 1996; Pannu & Read, 1996; Adams et al., 1997). Maximum-likelihood refinement without cross ...

An intuitive explanation of simulated annealing
Brunger, A. T., Adams, P. D. and Rice, L. M.  International Tables for Crystallography (2012). Vol. F, Section 18.2.4.4, p. 470 [ doi:10.1107/97809553602060000856 ]
... International Tables for Crystallography (2012). Vol. F, ch. 18.2, p. 470 © International Union of Crystallography 2012 | home | resources | advanced search ...
     [more results from section 18.2.4 in volume F]

A priori chemical information
Brunger, A. T., Adams, P. D. and Rice, L. M.  International Tables for Crystallography (2012). Vol. F, Section 18.2.3.2, p. 468 [ doi:10.1107/97809553602060000856 ]
... nucleic acid-containing structures. Acta Cryst. D52, 57-64. Pearlman, D. A. & Kim, S.-H. (1990). Atomic charges for DNA ... International Tables for Crystallography (2012). Vol. F, ch. 18.2, p. 468 © International Union of Crystallography 2012 | home | resources | advanced search ...
     [more results from section 18.2.3 in volume F]

Cross validation
Brunger, A. T., Adams, P. D. and Rice, L. M.  International Tables for Crystallography (2012). Vol. F, Section 18.2.2, pp. 466-467 [ doi:10.1107/97809553602060000856 ]
... all low-resolution diffraction data does not change the conclusions (Adams et al., 1997). The penicillopepsin diffraction data were artificially ...

Introduction
Brunger, A. T., Adams, P. D. and Rice, L. M.  International Tables for Crystallography (2012). Vol. F, Section 18.2.1, p. 466 [ doi:10.1107/97809553602060000856 ]
... better results than with conventional target functions (Pannu & Read, 1996; Adams et al., 1997; Read, 1997). Finally, the sampling power ... Burling & Brünger, 1994; Burling et al., 1996). References Adams, P. D., Pannu, N. S., Read, R. J. & Brünger, ...

Enhanced macromolecular refinement by simulated annealing
Brunger, A. T., Adams, P. D. and Rice, L. M.  International Tables for Crystallography (2012). Vol. F, ch. 18.2, pp. 466-473 [ doi:10.1107/97809553602060000856 ]
... better results than with conventional target functions (Pannu & Read, 1996; Adams et al., 1997; Read, 1997). Finally, the sampling power ... all low-resolution diffraction data does not change the conclusions (Adams et al., 1997). The penicillopepsin diffraction data were artificially ... more general maximum-likelihood formulation (Bricogne, 1991; Pannu & Read, 1996; Adams et al., 1997; Murshudov et al., 1997). The ...

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