International Tables for Crystallography (2012). Vol. F. ch. 19.10, pp. 629-632
https://doi.org/10.1107/97809553602060000876

Chapter 19.10. Single-particle reconstruction with EMAN

Contents

  • 19.10. Single-particle reconstruction with EMAN  (pp. 629-632) | html | pdf | chapter contents |
    S. Ludtke
    • 19.10.1. Introduction  (p. 629) | html | pdf |
    • 19.10.2. Overview of EMAN  (pp. 629-630) | html | pdf |
      • 19.10.2.1. GUI layer and workflow  (p. 629) | html | pdf |
      • 19.10.2.2. Command-line programs  (pp. 629-630) | html | pdf |
      • 19.10.2.3. Python wrapper  (p. 630) | html | pdf |
      • 19.10.2.4. C++  (p. 630) | html | pdf |
      • 19.10.2.5. Cross-platform support  (p. 630) | html | pdf |
      • 19.10.2.6. Parallel processing  (p. 630) | html | pdf |
      • 19.10.2.7. File formats and other conventions  (p. 630) | html | pdf |
    • 19.10.3. Single-particle reconstruction  (p. 631) | html | pdf |
      • 19.10.3.1. Particle selection (e2boxer.py)  (p. 631) | html | pdf |
      • 19.10.3.2. Contrast transfer function/image evaluation (e2ctf.py)  (p. 631) | html | pdf |
      • 19.10.3.3. Grouping particles into sets  (p. 631) | html | pdf |
      • 19.10.3.4. Reference-free two-dimensional classification (e2refine2d.py)  (p. 631) | html | pdf |
      • 19.10.3.5. Initial model generation (e2initialmodel.py)  (p. 631) | html | pdf |
      • 19.10.3.6. Refinement (e2refine.py)  (p. 631) | html | pdf |
    • 19.10.4. Evaluating the reconstruction  (pp. 631-632) | html | pdf |
      • 19.10.4.1. Model accuracy  (p. 632) | html | pdf |
      • 19.10.4.2. Measures of resolution and resolvability  (p. 632) | html | pdf |
      • 19.10.4.3. Model/noise bias  (p. 632) | html | pdf |
    • References | html | pdf |
    • Figures
      • Fig. 19.10.2.1. The overall workflow interface, and the dialogue for the three-dimensional refinement subtask  (p. 629) | html | pdf |
      • Fig. 19.10.2.2. A representation of the Euler GUI tool  (p. 630) | html | pdf |
    • Tables
      • Table 19.10.2.1. Listing of EMAN2 supported file formats and whether each has read (R) and/or write (W) support  (p. 630) | html | pdf |