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International Tables for Crystallography (2006). Vol. F. ch. 22.1, pp. 531-545
https://doi.org/10.1107/97809553602060000710 |
Chapter 22.1. Protein surfaces and volumes: measurement and use
Chapter index
Atomic solvation parameters 22.1.2.3.1
Binding energies 22.1.2.3, 22.1.2.3.2
Cambridge Structural Database (CSD)
van der Waals radii 22.1.1.4.1
Complete rolling algorithm 22.1.2.2.5
Connected rolling algorithm 22.1.2.2.5
Connolly dot surface 22.1.2.2.3
Contact surface 22.1.1.3.3.3, 22.1.2.1.2
Convex hull 22.1.1.3.2
Delaunay triangulation 22.1.1.2.4
Extended atoms 22.1.2.2.8
Gauss–Bonnet theorem 22.1.2.2.6
Hydration surface 22.1.2.1.3
Hydrophobicity 22.1.2.1.4, 22.1.2.3.1
Insight II 22.1.2.4.1.5
Marching-cube algorithm 22.1.2.2.4
Molecular surface 22.1.1.3.3.3, 22.1.2.1.2
Delaunay triangulation 22.1.1.2.4
Voronoi construction 22.1.1.2.1, 22.1.1.2.2
Packing coefficient 22.1.1.5.1
Packing density 22.1.1.5.1
Packing efficiency 22.1.1.5.1
Probe radius 22.1.1.4.2, 22.1.1.2
Probe sphere 22.1.1.3.3
Re-entrant surface 22.1.1.3.3.3, 22.1.2.1.2
Representation of surfaces 22.1.2.1.1, 22.1.2.4
photorealistic rendering 22.1.2.4.1.3
roadmaps 22.1.2.4.2
shaded backbone 22.1.2.4.1.1
Solvent-accessible surface 22.1.1.3.3.2, 22.1.2.1.2
Solvent-excluding surface 22.1.2.1.2
Standard atomic radii 22.1.1.1
Standard atomic volumes 22.1.1.4
Standard residue volumes 22.1.1.3
Surface-area calculation 22.1.2.1.1, 22.1.2.2
analytical 22.1.2.2.6
complete rolling algorithm 22.1.2.2.5
connected rolling algorithm 22.1.2.2.5
Connolly dot surface algorithm 22.1.2.2.3
extended atoms 22.1.2.2.8
Gauss–Bonnet theorem 22.1.2.2.6
Lee & Richards planar slices 22.1.2.2.2
marching-cube algorithm 22.1.2.2.4
Surface areas 22.1.1
Surfaces 22.1.2
Connolly dot surface 22.1.2.4.1.2
contact surface 22.1.1.3.3.3, 22.1.2.1.2
convex hull 22.1.1.3.2
definitions of 22.1.1.3
GRASP surfaces 22.1.2.4.1.4
hydration surface 22.1.2.1.3
occluded molecular surface 22.1.2.1.2
probe sphere 22.1.1.3.3
re-entrant surface 22.1.1.3.3.3, 22.1.2.1.2
solid polyhedral surfaces 22.1.2.4.1.2
solvent-accessible surface 22.1.1.3.3.2, 22.1.2.1.2
solvent-excluding surface 22.1.2.1.2
van der Waals surface 22.1.1.3.3.1, 22.1.2.1.2
Voronoi polyhedra 22.1.1.3.2
Surfaces, representation of 22.1.2.1.1, 22.1.2.4
photorealistic rendering 22.1.2.4.1.3
roadmaps 22.1.2.4.2
shaded backbone 22.1.2.4.1.1
Unified-atom approach 22.1.1.4.1
van der Waals radii 22.1.1.4.1, 22.1.2.1.2
from the CSD 22.1.1.4.1
van der Waals surface 22.1.1.3.3.1
Vertex error 22.1.1.2.3.2
Voronoi construction 22.1.1.2.2
Voronoi polyhedra 22.1.1.2.1
and surfaces 22.1.1.3.2
chopping-down method 22.1.1.2.3.3
for proteins 22.1.1.2.3
method B 22.1.1.2.3.1
radical-plane method 22.1.1.2.3.4
ratio method 22.1.1.2.3.1
vertex error 22.1.1.2.3.2