International
Tables for
Crystallography
Volume I
X-ray absorption spectroscopy and related techniques
Edited by C. T. Chantler, F. Boscherini and B. Bunker

International Tables for Crystallography (2024). Vol. I. ch. 3.34, pp. 516-519
https://doi.org/10.1107/S1574870722005407

Chapter 3.34. Diffraction anomalous fine structure: experiment and data analysis

Hubert Reneviera* and Maria Grazia Proiettib

aUniversité Grenoble Alpes, CNRS, Grenoble–INP, LMGP, 38016 Grenoble, France, and bDepartamento de Física de la Materia Condensada, Universidad de Zaragoza, INMA, CSIC–UNIZAR, Zaragoza, Spain
Correspondence e-mail:  [email protected]

In this chapter, the main experimental aspects of diffraction anomalous fine-structure spectroscopy (DAFS) are reported. The basic formalism is given in Renevier & Proietti (2024link to reference). The most relevant issues concerning data acquisition, data reduction and extended DAFS fitting are highlighted. Multiwavelength anomalous diffraction is briefly illustrated since it is intimately related to DAFS. A selected bibliography provides several examples of applications that are fundamental for a full understanding of this powerful spectroscopic technique.

Keywords: anomalous diffraction; diffraction anomalous fine structure; DAFS.

1. Introduction

Diffraction anomalous fine-structure spectroscopy (DAFS) provides information about the empty electronic orbitals and the local atomic environment of resonant atoms which are selected by the diffraction condition, thus combining the chemical selectivity of X-ray absorption fine-structure (XAFS) spectroscopy with the space- or site-selectivity of diffraction.

At the turn of the 21th century, increasing interest in structural studies of 0D to 2D epitaxial nanostructures and heterostructures, thin films and nanomaterials more generally led to the development and application of multiwavelength anomalous diffraction (MAD) and DAFS, in combination with XAFS and ab initio calculations, to determine strain, atomic composition and atomic long-range and short-range order as well as crystallographic polarity. MAD, DAFS, XAFS and ab initio calculations constitute a very efficient and powerful toolset for semiconductor heterostructures and nano­structures (Coraux et al., 2007link to reference; Katcho et al., 2011link to reference). The reader will find extensive information about DAFS spectroscopy (including DAFS in grazing-incidence geometry) in several review articles (Sorensen et al., 1994link to reference; Hodeau et al., 2001link to reference; Favre-Nicolin et al., 2012link to reference; Renevier & Proietti, 2013link to reference).

2. Multiwavelength anomalous diffraction

MAD is commonly used to phase structure factors in molecular crystallography and to determine cation occupancy in long-range ordered crystallographic sites. As shown in Renevier & Proietti (2024link to reference), MAD enables mapping of the modulus of the partial structure factors FA and FN and the phase difference φNφA from reciprocal-space maps measured at several energies close to the absorption edge of resonant atoms A (N refers to nonresonant atoms).

In the case of homogeneous binary alloys, φNφA = 0, where A and N atoms occupy the same crystallographic site, the ratio |FA|/|FN| readily gives the A-atom average content in the isostrain region picked up by the diffraction condition. However, the method applies as long as the isostrain scattering hypothesis is valid, i.e. when the heterostructures can be decomposed into isocell lattice-parameter regions which do not interfere, i.e. in the presence of large objects and strain gradients (Kegel et al., 2001link to reference). In the most general case, the crystallographic structure must be used to refine the occupation factor of the resonant atoms (Renevier et al., 1997link to reference).

MAD is an efficient method to disentangle strain and composition. In the following, we mainly focus on energy-scan measurements, data reduction and extended DAFS refinement.

3. Energy-scan diffraction

A DAFS experiment consists of measuring the scattered/diffracted intensity at a fixed point in reciprocal space and Q = 2sinθ/λ value (where 2θ is the scattering angle) as a function of the X-ray beam energy E = hc/λ, spanning a typical energy range of 1000 eV across an absorption edge. Q is the scattering vector, Q = k′ − k, where k and k′ are the incoming and outgoing X-ray beam wavevectors, respectively, and E is the X-ray beam energy. A DAFS spectrum cusp, measured over a large energy range (of the order of 1 keV) and a small step size (0.5–5 eV), corresponds to oversampled MAD data which provide very precise values of |FA|/|FN| and φNφA (or Mathematical symbol and φT − φA).

If one wants to quantitatively analyze the oscillatory fine structure of the DAFS spectrum, the latter must not present distortions and the monitor-corrected signal-to-noise ratio must be as high as 1000 or greater, i.e. comparable requirements to those for obtaining high-quality extended XAFS oscillations. This requires a fixed-exit diffraction beamline with a scanning monochromator coupled to a diffractometer, both with high-precision movements and monochromator dynamical tuning. The stability and footprint of the beam at the sample position are of major importance. To avoid distortions, high precision and reproducibility of the monochromator–diffractometer coupling are essential. For instance, 1 eV resolution at 10 keV with a Si(111) crystal monochromator requires a monochromator angle precision of about 2 × 10−5 rad and therefore the coupling precision must be of the same order (Renevier et al., 2003link to reference).

Another source of distortion is multiple Bragg diffraction in the sample or the substrate, which diverts intensity away from the sample. In this case the only way to try to improve the data is to rotate the sample about the azimuthal ψ angle. When using an orientation matrix, its accuracy in tracking the Bragg peak when scanning the energy must be verified. As for XAFS experiments, the incident beam must be carefully monitored, for instance, by measuring the fluorescence signal emitted from a high-purity metal foil of a few micrometres in thickness mounted in vacuum (Renevier et al., 2003link to reference).

With regard to detection, 2D pixel detectors have definite advantages in comparison with point or linear detectors. They cope with high counting rates with a low background intensity, allowing the collection of high-quality 3D reciprocal-space maps close to Bragg peaks on counting timescales of the order of tens of seconds to minutes.

One drawback of 2D detectors is the lack of a sufficient energy resolution to discriminate the fluorescence background. However, most often the 2D detectors are large enough to simultaneously record both the DAFS spectra and the fluorescence background in different regions of interest.

4. Data reduction

In the Born approximation, the intensity of the DAFS spectrum is related to the square modulus of the structure factor according to the formulaMathematical equationwhere I is corrected for the background intensity (mainly fluorescence yield), K is a scale factor, D is the detector efficiency, L and P are the Lorentz and polarization factors for Thomson scattering, respectively, A is the absorption correction and F(Q, E) is the structure factor (Als-Nielsen & McMorrow, 2001link to reference; Prince, 2006link to reference). D takes into account the whole detection setup, comprising the detector efficiency and absorption all the way from the monitor to the diffraction detector. The energy dependence of D is often linear within the energy range of interest (about 1 keV), so that D may be fitted to the DAFS spectrum by a straight line [D = m(ΔE + 1)], where m is the only adjustable parameter, ΔE = EE0 and E0 is the edge energy. Care must be taken to measure the DAFS spectrum far enough below and above the absorption edge up to the point where resonant scattering is negligible, otherwise the m parameter is correlated to the crystallo­graphic phase φTφA (Proietti et al., 1999link to reference).

For a rotation scan, i.e. with the sample rotation axis perpendicular to the plane of incidence containing k and k′, L = λ3/sin2θ (Als-Nielsen & McMorrow, 2001link to reference; Prince, 2006link to reference). The polarization correction for the Thomson scattering is given by the dot product squared of the polarization vectors of the incoming and outgoing beams.

4.1. Absorption correction

The absorption correction A, which depends on the energy, is a real concern for DAFS spectroscopy. It lowers the intensity level after the edge and distorts the DAFS oscillations. For bulk, concentrated samples the effect is very strong (Vacínová et al., 1995link to reference), except in grazing-incidence geometry and at sub­­critical incidence angles. The great advantage of nano­structured thin films is that the absorption correction is weak or negligible. In symmetric Bragg geometry, and for an incident beam projection area that is not larger than the sample surface area, the absorption of a thin film of thickness t is Mathematical equationwhere α is the incidence angle and μ (m−1) is the linear absorption coefficient. The prefactor 1/sinα takes the change of the X-ray beam footprint into account (Prince, 2006link to reference). The absorption coefficient can be expressed asMathematical equationwhere NT and NA are the number of nonresonant and resonant atoms per nm3, respectively. Equation (3)link to equation easily generalizes to the case of several different nonresonant atoms. If the film thickness is such that 2μ(t/sinα) ≪ 1, then At/sinα, a constant value (the incidence angle is changing very slightly in the DAFS energy range). For a bulk sample A = 1/2μ. To the first order in μ, the relative absorption amplitude is 2μ(t/sinα). All reflections are affected in the same way by the absorption, but weak reflections, for which resonant and non­resonant atoms scatter out of phase, are more convenient since they will exhibit larger resonant intensity variations than stronger reflections. Indeed, equation (3) in Renevier & Proietti (2024link to reference) shows that the relative resonant terms in the diffracted intensity are weighted by the ratios |FA|/|FN| and |FA|/|FN| squared.

In the case of an almost perfect crystal and strong reflection, Meyer et al. (2003link to reference) have provided a quantitative approach to correct for secondary extinction.

4.2. Crystal polarity

We have mentioned above two effects that modify the DAFS spectrum intensity level above the absorption edges, i.e. fluorescence (an increase) and absorption (a decrease). Only DAFS spectra corrected for the fluorescence background and absorption yield reliable φTφA values. It is worth mentioning that in the case of a noncentrosymmetric structure a difference in the diffracted intensity of Bijvoet pairs of reflections (Bijvoet et al., 1951link to reference) is detected when resonant effects (f′′) are significant. Friedel's law is no longer valid, i.e. I(hkl) ≠ I(hkl). The main effect on DAFS spectra measured with two Bijvoet pairs of reflections is the change in intensity level (an increase or decrease) after the edge because φTφA is changed to its opposite (note that this is not exactly true when taking the weak anomalous scattering of the non­resonant atoms into account). For instance, this effect is very strong in the case of the wurtzite structure (space group P63mc, polar structure) and allows the polarity of thin films and nanostructures to be determined (Hestroffer et al., 2011link to reference).

4.3. Determination of the resonant scattering factors

The resonant scattering factors Mathematical symbol and Mathematical symbol that are used to calculate the structure factors and the linear absorption μ are determined experimentally. In this way, the optical transfer function, including the monochromator resolution, the finite lifetime of the virtual excited state and the possible anisotropy of μ (in the case of a noncubic space group) are correctly taken into account. For instance, for the wurtzite structure Mathematical symbol and Mathematical symbol strongly depend on the orientation of the beam polarization vectors with respect to the [001] polar axis. Note that, most generally, Mathematical symbol and Mathematical symbol are tensors (Dmitrienko et al., 2005link to reference). When it is relevant and possible, the imaginary part Mathematical symbol is calculated from an experimental fluorescence spectrum multiplied by the beam energy and matched to a theoretical Mathematical symbol curve measured with the diffraction detector or a fluorescence detector close to the sample. The experimental Mathematical symbol curve is then Kramers–Kronig transformed to obtain Mathematical symbol (Cross et al., 1998link to reference). Note that in the case of strong absorption, the fluorescence spectrum is distorted by self-absorption and corrections must be applied (Tröger et al., 1992link to reference). Finally, calculated or tabulated values are used for nonresonant scattering factors (Chantler, 1995link to reference).

5. Extended DAFS analysis

Together with technical improvements, data analysis has also improved, relying on one hand on the solid support of the established MAD data treatment and on the other hand on the EXAFS approach (Stragier et al., 1992link to reference) with available and well-known codes for ab initio calculations, data simulation and analysis. A DAFS spectrum contains contributions from both the real and imaginary parts of the complex resonant scattering factors, whereas XAFS is only proportional to the imaginary part. In the simplest case, where the resonant atoms are located on one crystallographic site only, one can use equation (3) in Renevier & Proietti (2024link to reference) to perform an iterative Kramers–Kronig analysis and recover Mathematical symbol and Mathematical symbol (Cross et al., 1998link to reference). In the case of a non­centrosymmetric structure with several resonant crystallo­graphic sites, the iterative Kramers–Kronig procedure cannot be applied due the presence of ff′′ cross terms. Alternatively, the extended-region DAFS (EDAFS) above the edge can be analyzed according to a first-order approximation in χQ (see Section 3.1 of Renevier & Proietti, 2024link to reference), such as EXAFS oscillations (Proietti et al., 1999link to reference). Basically, the analysis consists of the following.

(i) Fitting equation (1)link to equation to the DAFS spectrum cusp (corrected for fluorescence) gives the scale factor SD (see equation 7 in Renevier & Proietti, 2024link to reference) and the crystallo­graphic phase φ0φA (see equation 8 in Renevier & Proietti, 2024link to reference).

(ii) χQ is obtained by multiplying SD by [(II0)/I0](Q, E) (where I0 is the smooth diffracted intensity, i.e. without oscillations). The phase difference φ0φA is added to the XAFS theoretical phase provided, for example, by the FEFF code (Ankudinov et al., 2002link to reference; Kas et al., 2024link to reference).

(iii) The new theoretical XAFS phases are used to analyze χQ, for instance with the IFEFFIT code (Newville, 2001link to reference; Newville & Ravel, 2024link to reference) implemented in the ARTEMIS package (Ravel & Newville, 2005link to reference, 2024link to reference).

Note that the path-by-path multiple-scattering approach is no longer valid in the energy region close to the absorption edge (Rehr & Albers, 2000link to reference). However, as in the case of X-ray absorption near-edge structure (XANES), the anomalous diffraction near-edge structure (DANES) can be calculated with a dedicated program, such as for instance FDMNES (see Joly, 2001link to reference; Bunău et al., 2024link to reference).

6. Conclusion

In this chapter we give a brief state-of-the-art survey of the DAFS technique, describing its most important experimental and data-reduction aspects. We provide a basic bibliography to approach the use of DAFS. DAFS combines the capabilities of X-ray absorption and diffraction techniques and is particularly suited to the study of the structural properties of low-dimensionality systems such as thin films and nanostructures.

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