International
Tables for
Crystallography
Volume I
X-ray absorption spectroscopy and related techniques
Edited by C. T. Chantler, F. Boscherini and B. Bunker

International Tables for Crystallography (2021). Vol. I. ch. 8.11, pp. 999-1007
https://doi.org/10.1107/S1574870720004759

Chapter 8.11. EXAFS applications in coordination chemistry

Farideh Jalilehvanda* and Patrick Frankb*

aDepartment of Chemistry, University of Calgary, Calgary, Alberta T2N 1N4, Canada, and bDepartment of Chemistry, Stanford University, Stanford, CA 94305, USA
Correspondence e-mail:  [email protected], [email protected]

This chapter describes the applications of EXAFS spectroscopy for structural characterization and chemical speciation of metal complexes with small ligands in solution, and in microcrystalline or amorphous solids. A few EXAFS studies have been presented showing that the structures of chemical species in solution are not necessarily the same as in the crystalline state. Examples of solvated species include those of alkaline-earth metals, the halides, transition metals, lanthanides and actinides. Other structural or spectroscopic methods such as wide-angle X-ray scattering (WAXS) and NMR combined with EXAFS, extending the data analysis to the XANES region, as well as combination of K edge and L edges, can improve structural models. EXAFS analysis of multiple elements within the same structure, sometimes in combination with X-ray powder diffraction data, can provide 3D information, including absorber–ligand bond angles. The possibility of using EXAFS spectroscopy for analyzing a mixture of species is also discussed. Future applications will exploit very high brilliance X-ray lasers and will include monitoring reaction dynamics in real time and the rapid acquisition of high-quality high-density data sets of time-evolving systems.

Keywords: EXAFS; coordination chemistry.

1. Introduction

EXAFS spectroscopy is a key technique in defining the local structure, including that around metal ions in solution and in amorphous solids. Several reviews have addressed general applications of EXAFS in coordination chemistry (Garino et al., 2014link to reference; Levina et al., 2005link to reference; Muñoz-Páez & Marcos, 2013link to reference; Ohtaki, 1999link to reference; Penner-Hahn, 1999link to reference; Szabó et al., 2006link to reference). The present review focuses on metal complexes with small ligands in solution, with a few examples of microcrystalline or amorphous solids.

The EXAFS method has several unique strengths. It is element-specific and phase-independent: it has equal applicability to amorphous or crystalline solids, to liquids and solutions, and to gases. The phase and amplitude of EXAFS yield the elemental identity of ligand donor atoms and absorber–ligand distances. Linearly bridging groups such as –C≡N– can focus photoelectron back-scatter, providing metrics as far away as 5 Å. The application of multiple-scattering EXAFS analysis to known rigid ligand systems, such as porphyrins, can also provide absorber–scatterer angles (Levina et al., 2005link to reference). Below, we highlight the strengths of EXAFS spectroscopy in understanding the nature of metal complexes. Certain limitations of the EXAFS method are discussed in Section 6link to section.

2. Complexes in crystals and solution

2.1. Lead(II)–penicillamine

A metal complex with strongly coordinated ligands does not always crystallize into the dominant solution structure. For example, with D-penicillamine (3,3′-dimethylcysteine; H2Pen), lead(II) crystallizes as the 1:1 Pb(S,N,O-Pen) complex even when a combination of Pb L3-edge EXAFS and 207Pb NMR shows that two 1:2 [Pb(S,N,O-Pen)(S-HnPen)]2−n (n = 0, 1) species with PbS2NO coordination prevail in solution, with average Pb–2S and Pb–2(N/O) distances of 2.64 ± 0.04 and 2.45 ± 0.04 Å, respectively (Freeman et al., 1974link to reference; Schell et al., 2012link to reference; Sisombath et al., 2014link to reference). This result highlights that the same system can be examined in solution, powder and crystalline states to explore solution equilibria and phase-related structural differences. This particular strength of EXAFS is now widely exploited to probe catalysts in operando (Bordiga et al., 2013link to reference; Weiher et al., 2005link to reference).

2.2. Copper(II) hydration

Despite nearly 70 years of study, the structure of dissolved d9 [Cu(aq)]2+ remains under active investigation, with a focus on the axial Jahn–Teller (JT) distortion. At the time of writing, the Cambridge Crystal Structure Database included 20 [Cu(aq)]2+ structures, including 17 [Cu(H2O)6]2+ structures, two [Cu(H2O)4]2+ structures and one [Cu(H2O)5]2+ structure (Dudev et al., 2006link to reference). Among the first-row transition-metal aqua ions, only copper(II) shows such structural variability, and has a similar heterogeneity in other ligand systems (Gray et al., 2000link to reference). Crystalline [Cu(H2O)6](ClO4)2 displays the standard JT-distorted octahedron, but [Cu(H2O)6](BrO3)2 does not [six Cu–O distances of 2.079 (4) Å], while crystalline [Cu(H2O)6](SiF6) includes both regular and JT-distorted octahedral structures in a 1:3 ratio (Blackburn et al., 1991link to reference; Cotton et al., 1993link to reference; Gallucci & Gerkin, 1989link to reference; Ray et al., 1973link to reference). With such heterogeneity of copper(II), the crystal structures cannot support inferences of solution structure.

Cu K-edge EXAFS of dissolved copper(II) complexes typically cannot resolve the five- and six-coordinate ligand alternatives because the axial ligands are weakly bound, distant and subject to rapid exchange (Helm & Merbach, 2005link to reference). EXAFS studies on [Cu(aq)]2+ in water have generally converged to a structural consensus describing a Jahn–Teller axially elongated octahedron with four Cu–Oeq distances of 1.95 ± 0.01 Å and two Cu–Oax distances of 2.29 ± 0.03 Å (D'Angelo et al., 1997link to reference; Persson et al., 2002link to reference; Tajiri & Wakita, 1986link to reference). Persson and coworkers combined Cu K-edge EXAFS (k ≃ 12 Å−1) with WAXS data and excluded the elongated square-pyramidal model on the grounds that the fitted single axial bond included an excessively small mean displacement (σ2; Persson et al., 2002link to reference).

Cu K-edge EXAFS to k = 18 Å−1 was attained with an aqueous copper(II) solution prepared using ultralow-zinc CuO (Frank et al., 2015link to reference). Analysis resolved two different axial Cu–O distances, Cu–Oax1 = 2.19 ± 0.01 Å and Cu–Oax2 = 2.33 ± 0.01 Å, along with four Cu–Oeq distances of 1.97 ± 0.01 Å. This model was extended with MINUIT XANES (MXAN) analysis (Benfatto et al., 2005link to reference), yielding a C4v axially elongated square-pyramidal [Cu(H2O)5]2+ structure (Fig. 1link to figure), with four Cu–Oeq distances of 1.97 ± 0.02 Å, one Cu–Oax distance of 2.09 ± 0.03 Å and a nonbonded water molecule with a Cu–O distance of 3.0 ± 0.1 Å.

[Figure 1]

Figure 1

Left: Fourier-filtered K-edge EXAFS spectrum of copper(II) in 1 M HClO4 (circles). Fits: JT octahedral, blue; elongated square pyramidal, green; elongated square pyramidal including a distant sixth oxygen scatterer, red. The vertical dotted line shows the k = 13.4 Å−1 zinc cutoff. Inset: the best fit is unique only above k = 13 Å−1. Right: the [Cu(H2O)5]2+ structural model (Frank et al., 2015link to reference).

2.3. Thiocyanate: an ambidentate ligand

Ambidentate ligands can bind at either or both of two internal sites and include cyanide (CN; C, N), cyanate (OCN; NO), thiocyanate (SCN; N, S), nitrite (Mathematical symbol; N, O) and sulfite (Mathematical symbol; S, O). Cadmium(II) can bind to either end of the thiocyanate ion. Crystalline octahedral Cd(SCN)2 includes two Cd–N (2.24 Å) and four Cd–S (2.76 Å) distances (Cannas et al., 1976link to reference). EXAFS, 113Cd NMR and X-ray diffraction studies of cadmium(II) complexation with NH4SCN or (C2H5)4N(SCN) revealed the formation of [Cd(NSC)2(SCN)2]2− and [Cd(NSC)3(SCN)]2− complexes in water or N,N-dimethyl­formamide (DMF), respectively (Ozutsumi et al., 1992link to reference). In dimethylsulfoxide (DMSO) with added NH4SCN or (C2H5)4NSCN, the solvent enters the coordination environment of cadmium(II), producing five-coordinate [Cd(NCS)3(SCN)(DMSO)]2− or [Cd(NCS)4(DMSO)]2− complexes, respectively. In the former complex, Mathematical symbol⋯NCS–Cd hydrogen bonding was ascribed to the S-bound thiocyanate.

The use of K-edge EXAFS, {1H}13C NMR and IR spectroscopies to examine (Bu4N)[Y(NCS)6], both crystalline and in aceto­nitrile solution, confirmed the Y–NCS linkage and Oh symmetry (Díaz-Moreno et al., 1998link to reference). The focused multiple scattering of linear Y–N–C–S units allowed the determination of distances to the third coordination shell. The best-fit EXAFS model had three single and 22 multiple scattering paths (up to six legs), limiting the refined Debye–Waller factors to four, which resulted in the following bond distances: Y–N = 2.36 ± 0.01 Å, Y–C = 3.5 ± 0.01 Å and Y–S = 5.1 ± 0.02 Å.

3. Solvation and hydrolysis

Structures of solvated species can be a different challenge, not only because of dynamical ligand exchange but also because of multiple solvation shells. Below, we describe several approaches to this problem, including the combination of EXAFS analysis with other structural methods such as wide-angle X-ray scattering (WAXS).

3.1. Gallium(III) solvation and hydrolysis

A combined WAXS and EXAFS study found that the gallium(III) ion in acidic aqueous solution binds six water molecules with Ga–O distances of 1.959 ± 0.006 Å, with 12 hydrogen-bonded water molecules in a second shell (Lindqvist-Reis et al., 1998link to reference). Careful analysis of EXAFS data measured at different OH:Ga3+ ratios (designated r) showed that hydrolysis eventually leads to the formation of the Ga13 Keggin ion (Michot et al., 2000link to reference). At r ≤ 1.8, the first coordination shell of gallium(III) consists of six O atoms (Ga–O = 1.95 ± 0.01 Å), which at high r (∼2.0–2.2) with nearly 100% Ga13 polycation is resolved into two subshells with four Ga–O distances of 1.92 ± 0.01 Å and two Ga–O distances of 2.03 ± 0.01 Å. Three sets of Ga⋯Ga distances occur at 3.01–3.05, 3.47–3.53 and 3.90–3.95 Å, although the latter could reflect multiple scattering. The full hydrolysis process was then described based on the formation and condensation of dimers, trimers and tetramers at different OH:Ga3+ ratios.

In dimethylsulfoxide solution, [Ga(O-DMSO)6]3+ ions dominate with a mean Ga–O distance of 1.955 ± 0.002 Å (Molla-Abbassi et al., 2003link to reference). Addition of twofold thiocyanate produced the five-coordinated complex [Ga(O-DMSO)4(SCN)]2+, with four Ga–O distances of 1.902 ± 0.006 Å and a Ga–S distance of 2.198 ± 0.006 Å. The shorter Ga–O distance is consistent with the change in gallium(III) ionic radius in six- and five-coordinated environments: 0.62 Å versus 0.55 Å (Shannon, 1976link to reference).

3.2. Copper(I) solvation

Cu K-edge EXAFS spectra are typically limited to k ≤ 13.4 Å−1 because of spurious intensity at the Zn K edge imposed by trace zinc impurities. EXAFS analyses of CuIX (X = Cl, Br, I) in acetonitrile, DMSO, pyridine (py) or aqueous solution with added excess halide salts showed dimerization dependent both on concentration and halide size (Table 1link to table). Linear [CuCl2] and planar [CuCl3]2– complexes are formed in non-aqueous and aqueous solutions, respectively (Persson et al., 1991link to reference). In aqueous solution at high temperature (100–325°C), [CuCl2] with a Cu–Cl distance of 2.13 ± 0.01 Å dominates in excess chloride (Fulton et al., 2000link to reference). Double-bridged [Cu2X4]2– (X = Br, I) complexes are observed in DMSO solutions, while [Cu2I4]2− dominates in concentrated copper(I) acetonitrile solution (Persson et al., 1991link to reference).

Table 1
Coordination chemistry of the cuprous halides

The typical Cu–X distance (R) error is ±0.03 Å (Persson et al., 1991link to reference).

 ChlorideR (Å)BromideR (Å)IodideR (Å)
Acetonitrile Mathematical symbol 2.10 Mathematical symbol 2.21 Mathematical symbol 2.59
DMSO Mathematical symbol 2.11 (Mathematical symbol and Mathematical symbol)§ 2.24, 2.36 Mathematical symbol 2.54
Pyridine Mathematical symbol 2.12 CuBr(py)3†† 2.41
H2O (excess Cl) Mathematical symbol 2.21
Copper concentration (CCu) = 88 mM.
CCu = 1 M, Cu–Cu distance of 2.73 Å.
§CCu = 1.5 M, Cu–Cu distance of 2.72 Å for the dimeric complex.
CCu = 1.5 M, Cu–Cu distance of 2.77 Å.
††CCu = 0.4 M, three Cu–N distances of 2.06 Å.

3.3. Lead(II) hydration

Studies of the solvation of lead(II) in water and several organic solvents further highlight the utility of EXAFS. Combined with WAXS, EXAFS revealed six Pb–O distances of 2.54 ± 0.01 Å for [Pb(aq)]2+ in dilute acidic solution (Persson et al., 2011link to reference). The fitted σ2 of 0.027 ± 0.001 Å2, indicating a large distribution of Pb–O distances (±0.16 Å), follows a theoretical prediction that electron density in antibonding lead 6s/ligand np molecular orbitals produces a distorted hemidirected structure and a spatial gap in the coordination sphere (Shimoni-Livny et al., 1998link to reference; Walsh & Watson, 2005link to reference). However, when dissolved in 1,1,3,3-tetramethylurea (TMU), a space-demanding ligand, the lead(II) ion organizes with six Pb–O distances of 2.517 ± 0.007 Å, now with a fitted σ2 of 0.009 ± 0.001 Å2, indicating only a ±0.09 Å spread in Pb–O distances and implying a symmetrical holodirected coordination induced by increased ligand–ligand interactions in a [Pb(TMU)6]2+ complex.

3.4. Actinide(III) hydration and ionic radii

The +3 oxidation state is most common for the heavier actinides, while the lighter actinide(III) ions are redox-unstable. The reported [An(aq)]3+ crystal structures, [M(H2O)9](CF3SO3)3 (M = U to Cm, Cf), all show tricapped trigonal prismatic hydration (Apostolidis et al., 2010link to reference; Lind­qvist-Reis et al., 2007link to reference; Matonic et al., 2001link to reference; Skanthakumar et al., 2007link to reference). EXAFS analyses of aqueous solutions reveal that the An–O distance shortens from 2.54 ± 0.02 Å for uranium(III) to 2.42 ± 0.01 Å for californium(III), consistent with ionic contraction across the actinide series (Brendebach et al., 2009link to reference; David et al., 1998link to reference; Galbis et al., 2010link to reference). This occurred without any specific trend in the coordination number (CN), which varies between eight and ten (Antonio & Soderholm, 2006link to reference). Analysis of a good-quality (k = 2–16 Å−1) L3-edge EXAFS spectrum for an acidic aqueous curium(III) solution resolved two distances: six (Cm–O)prism distances of 2.470 ± 0.006 Å and three (Cm–O)cap distances of 2.63 ± 0.02 Å (Skanthakumar et al., 2007link to reference), while for californium(III) neither a square antiprism (CN = 8) nor a tricapped trigonal prism (CN = 9) model could be ruled out (Galbis et al., 2010link to reference). Ab initio Monte Carlo quantum-mechanical models indicated that the EXAFS computed from a BP86 DFT (Rotzinger, 2005link to reference) simulation best reproduced the experimental EXAFS spectrum (CN ≃ 8 and R = 2.43 Å), implying eight first-shell water molecules for dissolved [Cf(aq)]3+ (Galbis et al., 2010link to reference). Assessing EXAFS in a more limited k range (2–10.3 Å−1), D'Angelo and coworkers found no decrease in coordination number in the actinide(III) series from uranium(III) to californium(III), and also found that dissolved [Cf(aq)]3+ is tricapped trigonal prismatic. They estimated the ionic radii of the dissolved uranium(III) to californium(III) ions in the actinide series by analyzing previously reported EXAFS spectra using a single-shell model for An–O with fixed CN = 9, finding a contraction from 2.527 ± 0.009 to 2.422 ± 0.007 Å (Δ = 0.1 Å; D'Angelo et al., 2013link to reference). The actinide(III) ionic radii in aqueous solution, obtained by subtracting the Shannon radius of a coordinated O atom (1.350 Å; David et al., 2001link to reference), are longer than the actinide(III) crystal structure radii but are similar to the lanthanide(III) counterparts.

3.5. Hydrated neptunium ions in different oxidation states

The systematic changes in the coordination environment of aqueous neptunium ions (237Np; t1/2 = 2.14 × 106 years) in 1.0 M HClO4 solution were investigated using EXAFS as the oxidation state of neptunium was varied in situ using an X-ray spectroelectrochemical cell (Antonio et al., 2001link to reference). [NpIII(H2O)9]3+ and [NpIV(H2O)9]4+ ions were produced with mean Np–O distances of 2.48 ± 0.02 and 2.37 ± 0.02 Å, respectively. Further oxidation yielded the trans-dioxoneptunyl species [NpVO2(H2O)5]+ and [NpVIO2(H2O)5]2+ with Np=Oax bond lengths of 1.80 ± 0.02 and 1.73 ± 0.02 Å and average equatorial Np–Oeq(H2O) bond distances of 2.44 ± 0.03 and 2.36 ± 0.03 Å, respectively. Each pair of hydrated species, NpIII→NpIV and NpV→NpVI, exhibited contraction of the bond distances with increasing oxidation state.

However, the above results are somewhat parameter-dependent. An independent analysis of high-quality (k ≃ 19.5 Å−1) L3-edge EXAFS spectra of hydrated neptunium(IV), neptunium(V) and neptunium(VI) ions in 1.0 M HClO4 proposed [NpIV(H2O)10]4+ species (mean Np–O distance of 2.40 ± 0.01 Å, CN = 10.4 ± 1 with amplitude reduction factor Mathematical symbol = 0.9 or CN = 9.7 ± 1 with Mathematical symbol = 1.0; Ikeda-Ohno et al., 2008link to reference). The EXAFS spectra of neptunium(V) and neptunium(VI) were fitted with [NpVO2(H2O)5–6]+ and [NpVIO2(H2O)5]2+ models with Np=Oax bond distances of 1.84 ± 0.01 and 1.76 ± 0.01 Å and with average Np–Oeq(H2O) bond lengths of 2.49 ± 0.01 and 2.42 ± 0.01 Å, respectively, all of which are nominally longer than in the above 2001 study. This average NpV–Oeq(H2O) distance of 2.49 ± 0.01 Å is intermediate between the bond lengths of 2.46 or 2.55 Å for five or six equatorial water ligands, respectively, from crystal structures with [NpO2(aq)]+ ions. Therefore, the authors suggested that both [NpVO2(H2O)5]+ and [NpVO2(H2O)6]+ are present in aqueous solution (Ikeda-Ohno et al., 2008link to reference). Comparing bond distances for solvated species with those in crystal structures is generally more reliable in order to obtain coordination numbers (especially at high CN) than a value from EXAFS model refinement, which is affected by additional uncertainty from an assumed amplitude reduction factor Mathematical symbol; see Section 3.8link to section.

Another EXAFS study of hydrated neptunium(IV) ions proposed [NpIV(H2O)11.2±1.1]4+ complexes (Np–O distance of 2.40 ± 0.01 Å, Mathematical symbol = 0.9; Allen et al., 1997link to reference), which can be compared with the EXAFS models for hydrated uranium(IV): [UIV(H2O)8.7±1.3]4+ (U–O = 2.41 ± 0.02 Å, Mathematical symbol = 1.0; Hennig et al., 2007link to reference) or [UIV(H2O)10±1]4+ (U–O = 2.42 ± 0.01 Å, Mathematical symbol = 1.0; Moll et al., 1999link to reference).

3.6. Halide-ion hydration

The low energy of the F K-edge, 696.7 eV, presently forestalls aqueous-phase EXAFS analysis. A K-edge EXAFS study of aqueous Cl, limited to k = 8 Å−1 due to a multi-electron excitation at 8.1 Å−1, revealed a shell of 6.4 hydrogen-bonded water molecules with a mean Cl⋯H distance of 2.23 ± 0.04 Å and Cl⋯O distance of 3.14 ± 0.02 Å, and a Cl–H–O angle of 156° (Fulton & Balasubramanian, 2010link to reference), consistent with previous neutron diffraction metrics of Cl⋯H = 2.28 ± 0.03 Å and Cl⋯O = 3.1 ± 0.1 Å (Powell et al., 1993link to reference).

Combined Br K-edge EXAFS analysis and Monte Carlo simulation revealed an asymmetrical shell of 6.0 ± 0.5 water molecules at a mean Br⋯O distance of 3.44 ± 0.07 Å (Merkling et al., 2003link to reference), which is in good agreement with the previously found solvation shell (seven Br⋯O distances of 3.4 Å) using X-ray anomalous scattering (Ramos et al., 2000link to reference). Concurrent iodine multiple-edge (K, L1, L3) EXAFS analysis revealed an asymmetric solvation shell of 6.3 water molecules with a mean I⋯H distance of 2.65 ± 0.03 Å and I⋯O distance of 3.50 ± 0.02 Å, corresponding to an I–H–O angle of 148° (Fulton et al., 2010link to reference).

EXAFS combined with MXAN produced 3D solvation models for aqueous Cl, Br and I (Antalek et al., 2016link to reference). Bromide and iodide exhibited globally symmetric solvation spheres, while chloride uniquely required a second shell with seven Cl⋯H–OH distances of 4.14 Å. EXAFS fitting parameters for halide hydration are given in Table 2link to table.

Table 2
EXAFS fitting parameters for halide hydration

HalideCNX⋯H (Å)X⋯O (Å)X–H–O (°)Reference
Cl 6.4 2.23 (4) 3.14 (2) 156 Fulton & Balasubramanian (2010link to reference)
6.4 (1.0)   3.11 (3)   Dang et al. (2006link to reference)
6.0 (1.7)   3.05 (4)   Tongraar et al. (2010link to reference)
7.0§ 2.18 (2) 3.15 (2) 166 (2) Antalek et al. (2016link to reference)
Br 6.9   3.34   D'Angelo et al. (1994link to reference)
5.1 (5)   3.29 (4)   Simonet et al. (2002link to reference)
6.0 (5)   3.44 (7)   Merkling et al. (2003link to reference)
    3.40   Filipponi et al. (2003link to reference)
10.7   3.33 (3)   Feiters et al. (2005link to reference)
8 (1)§ 2.48 (2) 3.40 (2) 159 (2) Antalek et al. (2016link to reference)
I 6.3 (9) 2.65 (3) 3.50 (2) 148 Fulton et al. (2010link to reference)
10.0   3.56 (3)   Feiters et al. (2005link to reference)
8 (1)§ 2.67 (2) 3.59 (2) 159 (2) Antalek et al. (2016link to reference)
Fixed value from aqueous and crystalline standards (Dang et al., 2006link to reference).
Uncertainties in the last digit are given parenthetically.
§Refined EXAFS parameters: four Cl⋯O distances of 2.91 (1) Å, three Cl⋯O distances of 3.11 (1) Å, ten Br⋯O distances of 3.26 (3) Å and nine I⋯O distances of 3.50 (3) Å.
Refined EXAFS distance of 3.34 (3) Å.

3.7. Metal ions in ionic liquids

EXAFS investigations of metal complexes in ionic liquids have been reviewed (Estager et al., 2014link to reference; Hardacre, 2005link to reference). M(BF4)2·6H2O (M = Co2+, Cu2+) salts dissolved in [EMIm][BF4] (EMIm = 1-ethyl-3-methylimidazolium) produce unusual tetrahedral M(H2O)4]2+ aqua ions (Takao et al., 2012link to reference). Likewise, tetrahedral [CuCl4]2− complexes form when dissolving anhydrous CuCl2 in [EMIm][Cl] (Li et al., 2010link to reference). Copper(II) and nickel(II) hydrates dissolved in [C6MIm][Cl] (C6MIm = 1-hexyl-3-methylimidazolium) were found to form [CuCl3] and [NiCl3] complexes, governed by the large size of the [C6MIm]+ cation, while in [EMIm][SCN] solvent [Cu(NCS)2(SCN)] is formed. Chromium(III) chloride hydrate forms [CrCl4(H2O)2]2− and [Cr(NCS)6]3− complexes in the ionic liquids [C6MIm][Cl] and [EMIm][SCN], respectively (Hartley et al., 2014link to reference).

3.8. Impact of multi-electron excitations on defining the solvation shell

Multi-electron excitations can impact EXAFS fits, influencing coordination numbers and bond distances. For example, the L3-edge EXAFS spectra of light lanthanide(III) complexes exhibit double-electron excitations (2p4d→5d2) in the k range 5–7 Å−1 (Solera et al., 1995link to reference). For lanthanide ions and third-row transition metals, the short core-hole lifetime of high-energy K-edge EXAFS broadens double-electron features into negligible intensity. The long k range available from lanthanide K-edge EXAFS can compensate for the loss of information from spectral broadening and larger core-hole width (Γ) relative to the L edges (D'Angelo et al., 2008link to reference).

Multi-electron excitations are also prominent in the Ca K-edge EXAFS of calcium(II) aqueous solutions at k = 2.7, 3.7 and 10.3 Å−1, which correspond to [1s3p], [1s3s] and [1s2p] double-electron excitations, respectively (Fulton et al., 2003link to reference), and in yttrium(III) K-edge EXAFS (Chaboy et al., 2001link to reference; Díaz-Moreno et al., 2000link to reference). In a background-correction procedure relying on the Z-dependent similarity of the multi-electron background, the Ar K-edge XAS was used to remove the multi-electron features of dissolved [Ca(aq)]2+, finding (7.2 ± 1.2) Ca–Oave distances of 2.437 ± 0.01 Å (Mathematical symbol ± 20%) and back-scattering from 16 Ca⋯H distances of 2.97 ± 0.02 Å (Fulton et al., 2003link to reference). Alternatively, double-electron excitations can be fitted rather than omitted, as in analysis of the K-edge EXAFS of dissolved [Ca(aq)]2+ (eight Ca–O distances of 2.42 Å in a disordered shell and Ca⋯H = 3.10 Å; D'Angelo et al., 2004link to reference).

The double-electron excitations [1s4s], [1s3d] and [1s3p] were observed in the K-edge EXAFS of aqueous strontium(II). EXAFS analysis using an atomic background model to account for these transitions yielded a solvation sphere with (10.3 ± 0.1) Sr–Oave distances of 2.643 ± 0.002 Å, while ignoring this model produced underestimated coordination numbers: 6.3 Sr–Oave at 2.62 Å (D'Angelo, Nolting et al., 1996link to reference) and (7.3 ± 0.5) Sr–Oave at 2.62 ± 0.03 Å (Pfund et al., 1994link to reference).

For dissolved [Ba(aq)]2+, disregarding the respective L3,2- and L1-edge [2p4d]→[5d]2 and [2s4d]→[6p5d] double-electron excitations yielded RBa–O = 2.780 ± 0.003 Å and systematically underestimated the Ba–O coordination number, i.e. CNBa–O = 6.9 rather than 7.8 ± 0.3 (D'Angelo, Pavel et al., 1996link to reference). However, it is not clear why the same corrected EXAFS method produced a higher hydration number of 10.3 ± 0.1 for the smaller strontium(II) cation. Combined EXAFS and WAXS results suggested the same hydration number of 8.1 ± 0.3 for both metal ions, with RSr–O = 2.63 ± 0.02 Å and RBa–O = 2.81 ± 0.03 Å (Persson et al., 1995link to reference).

4. Multiple-edge XAS

Structural information can be extended when more than one element in a structure is susceptible to EXAFS analysis, because internal distances can be derived from independent absorbers. In some cases, intramolecular angles become available (Section 4.4link to section).

4.1. Mixed-metal periodates

K-edge EXAFS and X-ray powder diffraction were combined to structurally characterize several microcrystalline M′[MIO6xH2O complexes (M′ = Na+–Cs+, Mathematical symbol and MIV = Ni, Pb, Sn, Ge, Mn; Levason, 1997link to reference). Sodium persulfate (Na2S2O8) oxidation of dissolved NiSO4 plus Na3H2IO6 produced solid Na[NiIO6], for which Ni and I K-edge EXAFS spectra were collected. X-ray powder diffraction data showed that Na[NiIO6] belongs to space group P312 with layered edge-sharing NiO6 and IO6 octahedra and intercalated sodium ions. EXAFS analyses (fixed coordination numbers) yielded an Ni–O distance of 1.863 ± 0.002 Å, an I–O distance of 1.868 ± 0.001 Å and an Ni⋯I distance of 2.85–2.86 Å (Currie et al., 1994link to reference). The refined Ni⋯Ni distance of 4.969 ± 0.005 Å closely matched the unit-cell edge a from powder diffraction.

4.2. Platinum–thallium cyano complexes

Cyanide as a ligand can promote M1–CN–M2 electronic delocalization (Giorgetti et al., 1997link to reference). [Pt(CN)4]2− and [Tl(CN)n]3−n (n = 2–4) combine to form hetero-dimetallic [(NC)5Pt–Tl(CN)n]n (n = 0–3) complexes in solution. Pt and Tl L3-edge EXAFS, vibrational and multinuclear (195Pt, 205Tl, 13C) NMR spectroscopies characterized the complexes and the local structure around platinum and thallium (Jalilehvand, Maliarik et al., 2001link to reference). The EXAFS analysis revealed single and focused multiple scattering (up to four legs) of linear Pt–C–N and Tl–C–N units and short Pt–Tl distances (2.60–2.64 Å).

Slow evaporation of an acidic (HClO4) [(NC)5Pt–Tl(CN)] solution produced polycrystalline TlPt(CN)5. X-ray powder diffraction revealed both proximate Pt–Tl = 2.627 ± 0.002 Å and TlPt(CN)5 units forming linear –NC–Pt–Tl–NC–Pt–Tl– chains. Pt and Tl L3-edge EXAFS analyses indicated extensive multiple scattering from the five linear axial and equatorial Pt–C–N bonds, but not from the four bent (149°) equatorial Tl–N–C bonds. The equatorial and axial Tl–N distances refined independently to 2.50 ± 0.01 and 2.31 ± 0.03 Å, respectively (Jalilehvand, Eriksson et al., 2001link to reference).

The complex [(NC)4Pt–Tl(O-DMSO)5]+, derived from mixing K2[Pt(CN)4]·3H2O and [Tl(DMSO)6](ClO4)3 in dimethylsulfoxide, was studied using Pt and Tl L3-edge EXAFS, multinuclear NMR and DFT calculations. The unoccupied sixth coordination site of platinum generated a slightly longer Pt–Tl bond with a distance of 2.67 ± 0.01 Å, with a mean Tl–O distance of 2.282 ± 0.002 Å and a Tl–O–S angle of 120°. The metal–metal bond has been described as a Mathematical symbol→Tl(6s)0 donation (Purgel et al., 2011link to reference).

4.3. Actinide(IV) hexacyanoferrates

The advantages and limitations of multiple-edge EXAFS spectroscopy were analyzed in applications to mixed-metal iron(II)/cobalt(II)/nickel(II) hexacyanoferrates (Giorgetti & Berrettoni, 2008link to reference). Microcrystalline AnIVFeII(CN)6·xH2O complexes, in the hexagonal space group P63/m (An = Th, Np, Pu), were studied using Fe K-edge and An L3-edge EXAFS and X-ray powder diffraction. The iron EXAFS Fourier transforms showed enhanced multiple scattering focused along the linear Fe–C–N segments within the {Fe(CN)6} units (Dumas et al., 2013link to reference). Cyano bridges connect An(IV) to {Fe(CN)6}, producing {An(NC)6(H2O)3} tricapped trigonal prisms with three equatorial water ligands. The An–N–C angle varies between 155° and 165°, reducing the multiple scattering along this path and damping the corresponding An L3-edge EXAFS Fourier transform feature. The mean An–N distance decreases from 2.58 ± 0.03 Å for thorium(IV) to 2.45 ± 0.01 Å for neptunium(IV) to 2.42 ± 0.01 Å for plutonium(IV), reflecting the `actinide contraction'. The average An–H2O distance (which is shorter than the An–N distance) follows the same trend. However, the EXAFS model fitting was performed over the range k = 0–12 Å−1, thus mistakenly including the XANES region (k < ∼2 Å−1), wherein the short wavelength of the photoelectron due to its low kinetic energy (5–150 eV) makes multiple-scattering events between neighbour atoms dominant over single scattering.

4.4. Grignard reagent CH3MgBr

The Grignard reagent CH3MgBr in di-n-butylether solution was examined by measuring both Mg and Br K-edge EXAFS spectra using a UHV-compatible cell for liquid samples (Abraham et al., 1996link to reference). The independent Mg⋯Mg and Br⋯Br distances allowed calculation of the internal angles within the dimeric species (Fig. 2link to figure). The bromide L3-edge at 1550 eV limited the Mg EXAFS oscillation to k = 8 Å−1.

[Figure 2]

Figure 2

The Mg and Br K-edge EXAFS spectra of CH3MgBr in (C4H9)2O solution at −85°C and the angular structure of the dimeric complex with a double Br bridge derived from independent distances around the Mg and Br atoms. The O atom of di-n-butylether coordinated to magnesium(II) is shown in light red. Reprinted from Abraham et al. (1996link to reference), with permission from Elsevier.

4.5. Amorphous solid Cd(HCys)2·H2O

The Cd K-edge EXAFS spectrum of the white precipitate formed when Cd(OAc)2 is added to twofold cysteine (H2Cys) in aqueous solution consistently yielded a Cd–S distance of 2.52 ± 0.02 Å in either CdS4 or CdS3O coordination models. The CdS3O model, with a Cd–O distance of 2.27 ± 0.04 Å consistent with crystalline CdS3O compounds (Cd–Oave = 2.240 Å), proved superior when compared against the Cd L3-edge XANES spectra of Cd(HCys)2·H2O and crystalline CdIISx(N/O)y thiolate complexes (Jalilehvand et al., 2009link to reference).

5. Mixed species in solution and evolving factor analysis (EFA)

XAS spectra follow Beer's law, so that the EXAFS of mixtures are a linear sum of the EXAFS of the components. If the component EXAFS oscillations are sufficiently different, the number of species can be estimated using EFA, an application of principal component analysis (PCA). The approach requires multiple XAS spectra of a chemical system evolving with change in conditions, such as pH or ligand concentration, and typically requires the XAS of the beginning and end states of the evolving chemical system. The empirical orthogonal factors (EOF) of significant intensity can reveal the number of interacting chemical species. A plot of EOF intensities versus, for example, ligand concentration reveals speciation. Under some conditions, binding constants can be derived and complex systems can be fully specified (Conti et al., 2010link to reference; Gampp et al., 1985link to reference; Garrido et al., 2008link to reference; Maeder, 1987link to reference; Rossberg et al., 2003link to reference).

Speciation of a mixture can also be achieved by linear combination of the experimental EXAFS spectra of the individual components, if they are known, as for example for molybdenum(V) complexes in aqueous HCl (Jalilehvand et al., 2007link to reference). If unknown, the EXAFS of a specific component can be calculated from a model, as was performed in the study of mercury(II) complexation with cysteine and its derivatives; see Fig. 3link to figure (Jalilehvand et al., 2006link to reference, 2013link to reference).

[Figure 3]

Figure 3

Fitting the experimental EXAFS spectrum of a mercury(II)–cysteine solution (Mathematical symbol = 0.083 M, Mathematical symbol = 0.334 M, pH 9.1) to linear combinations of the simulated EXAFS oscillations for Hg(S,N-Cys)2 (14%; Hg–S = 2.34 Å), Hg(S-Cys)3 (40%; Hg–S = 2.44 Å) and Hg(S-Cys)4 (46%; Hg–S = 2.52 Å) (Warner & Jalilehvand, 2016link to reference).

6. Limitations of EXAFS

6.1. Uncertainties

In EXAFS spectroscopy the sensitivity to back-scattering atoms is limited to ∼5 Å, because the EXAFS amplitude reduces with 1/R2 and also with high mean displacement (σ2) of nonbonded absorber–scatterer pairs at distance R, especially in solution. Therefore, EXAFS analysis may be of limited utility in defining the structure of a loosely bound second hydration shell (Ohtaki & Radnai, 1993link to reference), as shown for cobalt(II), nickel(II) and zinc(II) in aqueous solution (D'Angelo et al., 2002link to reference). Exceptions include the well defined second hydration shells for the [Cr(H2O)6]3+ complex ion and its chloroaqua cognates, [CrCln(H2O)6−n](3−n)+ (n = 1–3) (Díaz-Moreno et al., 1996link to reference; Munoz-Paez & Marcos, 1992link to reference), as well as for the [Cu(NH3)5]2+ complex ion (Frank et al., 2008link to reference).

Several examples in this chapter relate the EXAFS uncertainty (±20%) in coordination number and its correlation to the amplitude reduction factor, Mathematical symbol, describing inelastic losses due to multi-electron excitations (Bauer & Bertagnolli, 2007link to reference).

6.2. The need for complementary physical methods

EXAFS analysis cannot distinguish between back-scattering atoms of adjacent Z, for example (N, O) or (S, Cl). However, additional information supplied by complementary techniques, including multinuclear NMR and UV–visible spectroscopy, can allow detailed speciation and structural characterization. For example, combined results from 13C, 207Pb NMR, UV–Vis spectroscopy and electrospray ionization mass spectrometry (ESI-MS) were required to unveil co-existing dithiolate [Pb(S,N,O-Cys)(S-HCys)], [Pb(S,N-Cys)2]2− and trithiolate [Pb(S,N-Cys)(S-HCys)2]2−, [Pb(S-HCys)3] (minor) complexes in lead(II)–cysteine solutions (Jalilehvand et al., 2015link to reference). As the Pb–S distances, 2.65 ± 0.03 Å, did not differ significantly in the above three- or four-coordinated lead(II) complexes, and separation of the O/N EXAFS contributions in the presence of heavy back-scatterers such as S was difficult, the information from complementary spectroscopic methods was essential in identifying the chemical species in solution.

7. Future perspectives

The advantages conferred by EXAFS studies in providing structural metrics for almost any element (except the lightest) in virtually any phase (solid, liquid, gas, crystalline, amorphous or glassy) are now very well established. Future prospects include in situ/in operando and flow methods to understand reaction mechanisms and enzymatic structure/functions. The recent combination of EXAFS and MXAN makes use of information in the entire XAS spectrum to yield fully three-dimensional structures. These can be combined with DFT calculations to understand edge features in terms of electronic states and illuminate the fundamentals of structure and mechanism in terms of those states. The recent appearance of extremely high-brilliance, femtosecond pulse-width X-ray lasers holds out the promise of single-shot XAS spectroscopy and EXAFS structural resolution of nanosecond structural intermediates.

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